Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 3.0e-86 322.0 186 100.0
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 1.8e-67 259.6 188 72.9
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 2.6e-50 202.6 120 78.3
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 1.7e-49 199.9 120 77.5
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 2.9e-49 199.1 120 76.7
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 5.0e-49 198.4 122 73.0
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 1.4e-48 196.8 126 73.8
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 1.4e-48 196.8 121 75.2
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 1.9e-48 196.4 118 78.0
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 3.2e-48 195.7 122 73.8
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 3.2e-48 195.7 127 71.7
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 3.2e-48 195.7 119 75.6
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 5.5e-48 194.9 118 74.6
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 5.5e-48 194.9 119 74.8
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 7.2e-48 194.5 127 70.1
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 9.4e-48 194.1 122 73.0
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 9.4e-48 194.1 120 75.0
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 9.4e-48 194.1 118 76.3
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 9.4e-48 194.1 118 76.3
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 1.2e-47 193.7 122 73.0
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 1.2e-47 193.7 119 73.1
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 1.2e-47 193.7 124 70.2
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 1.6e-47 193.4 122 73.0
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 1.6e-47 193.4 122 73.0
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 1.6e-47 193.4 121 72.7
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 1.6e-47 193.4 121 71.1
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 2.1e-47 193.0 118 75.4
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 2.1e-47 193.0 123 74.8
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 2.7e-47 192.6 122 73.0
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 2.7e-47 192.6 127 70.9
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 2.7e-47 192.6 121 71.1
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 2.7e-47 192.6 179 55.9
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 2.7e-47 192.6 118 75.4
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 2.7e-47 192.6 125 71.2
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 2.7e-47 192.6 125 71.2
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 2.7e-47 192.6 126 70.6
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 3.6e-47 192.2 127 70.9
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 3.6e-47 192.2 123 71.5
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 4.7e-47 191.8 119 72.3
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 4.7e-47 191.8 118 74.6
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 4.7e-47 191.8 122 71.3
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 4.7e-47 191.8 118 74.6
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 6.1e-47 191.4 118 74.6
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 6.1e-47 191.4 126 69.0
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 8.0e-47 191.0 121 70.2
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 8.0e-47 191.0 121 70.2
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 1.0e-46 190.7 119 72.3
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 1.0e-46 190.7 121 72.7
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 1.0e-46 190.7 121 71.1
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.8e-46 189.9 118 72.0
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.8e-46 189.9 118 72.0
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 1.8e-46 189.9 116 73.3
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 2.3e-46 189.5 119 73.1
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 2.3e-46 189.5 118 72.9
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 2.3e-46 189.5 116 73.3
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 2.3e-46 189.5 118 72.9
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 2.3e-46 189.5 118 74.6
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 2.3e-46 189.5 121 70.2
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 2.3e-46 189.5 121 72.7
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 3.0e-46 189.1 125 70.4
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 3.0e-46 189.1 122 70.5
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 3.0e-46 189.1 120 71.7
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 3.0e-46 189.1 118 74.6
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 3.0e-46 189.1 125 70.4
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 3.0e-46 189.1 123 69.1
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 3.9e-46 188.7 118 74.6
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 3.9e-46 188.7 120 73.3
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 3.9e-46 188.7 123 69.1
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 5.2e-46 188.3 118 71.2
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 6.7e-46 188.0 126 69.0
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 8.8e-46 187.6 118 72.9
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 8.8e-46 187.6 118 72.9
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 1.1e-45 187.2 121 71.1
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 1.1e-45 187.2 120 68.3
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 1.5e-45 186.8 127 66.9
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 2.0e-45 186.4 118 70.3
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 2.0e-45 186.4 121 70.2
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 2.6e-45 186.0 121 70.2
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 2.6e-45 186.0 121 67.8
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 3.3e-45 185.7 121 70.2
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 4.4e-45 185.3 118 72.9
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 5.7e-45 184.9 121 71.9
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 7.4e-45 184.5 117 71.8
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 9.7e-45 184.1 127 67.7
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 9.7e-45 184.1 119 69.7
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 9.7e-45 184.1 122 65.6
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 1.3e-44 183.7 127 67.7
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 1.3e-44 183.7 126 68.3
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 2.2e-44 183.0 121 70.2
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 2.2e-44 183.0 127 66.9
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 3.7e-44 182.2 128 66.4
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 4.8e-44 181.8 126 67.5
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 6.3e-44 181.4 126 65.9
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 1.4e-43 180.3 121 68.6
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 2.4e-43 179.5 135 66.7
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 7.0e-43 177.9 126 68.3
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 7.0e-43 177.9 120 66.7
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 4.5e-42 175.3 106 75.5
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 5.9e-42 174.9 121 67.8
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 6.7e-38 161.4 116 65.5
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 3.3e-37 159.1 145 55.2
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 2.2e-36 156.4 120 59.2
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 2.0e-34 149.8 131 57.3
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 2.0e-34 149.8 140 52.1
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 3.5e-34 149.1 99 66.7
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 1.1e-32 144.1 131 56.5
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 5.2e-30 135.2 141 49.6
Haze_27087 Corylus avellana HOM05D006706 ORTHO05D008794 4.4e-21 105.5 116 47.4
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 1.3e-20 104.0 120 48.3
EL10Ac2g02413 Beta vulgaris HOM05D006706 ORTHO05D008794 1.4e-19 100.5 61 77.0
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 9.2e-19 97.8 58 69.0
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 9.2e-19 97.8 66 63.6
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 2.7e-18 96.3 58 67.2
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 7.8e-18 94.7 57 71.9
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 1.9e-11 73.6 61 50.8
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 3.9e-09 65.9 38 76.3


User provided reference genes

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