Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.0e-83 312.0 180 100.0
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 1.2e-31 140.6 185 56.2
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.2e-18 97.4 117 59.0
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.4e-16 90.5 135 58.5
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.1e-12 76.6 198 36.9
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.1e-12 76.6 198 36.9
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.4e-11 73.9 208 36.5
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.4e-11 73.9 208 36.5
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 3.1e-11 72.8 190 40.5
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 3.1e-11 72.8 203 34.5
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 4.0e-11 72.4 203 35.0
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 4.0e-11 72.4 221 35.7
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 8.9e-11 71.2 206 35.9
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-10 70.9 192 35.9
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.5e-10 70.5 181 34.8
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.5e-10 70.5 207 36.7
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.6e-10 69.7 192 37.0
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 3.4e-10 69.3 187 41.2
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 3.4e-10 69.3 206 35.9
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 5.8e-10 68.6 214 36.0
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 7.5e-10 68.2 200 34.0
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.8e-10 67.8 196 34.7
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.7e-09 65.9 132 38.6
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.7e-09 65.9 187 32.6
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 6.4e-09 65.1 204 36.3
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 6.4e-09 65.1 180 31.7
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 8.3e-09 64.7 165 37.0
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 8.3e-09 64.7 191 32.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.1e-08 64.3 202 35.1
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.1e-08 64.3 219 29.7
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-08 64.3 212 29.7
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-08 64.3 219 29.7
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-08 64.3 219 29.7
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-08 64.3 219 32.4
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.1e-08 64.3 212 39.6
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.4e-08 63.9 201 33.8
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.4e-08 63.9 217 29.5
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.4e-08 63.9 194 35.6
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.9e-08 63.5 180 30.6
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 2.4e-08 63.2 41 61.0
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.2e-08 62.8 159 37.1
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.2e-08 62.8 173 32.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.1e-08 62.4 89 53.9
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 4.1e-08 62.4 89 53.9
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 4.1e-08 62.4 187 28.9
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 5.4e-08 62.0 189 34.9
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 5.4e-08 62.0 208 33.2
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.4e-08 62.0 40 57.5
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.4e-08 62.0 95 58.9
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 7.0e-08 61.6 42 61.9
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 7.0e-08 61.6 203 34.5
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 7.0e-08 61.6 40 60.0
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.2e-08 61.2 40 60.0
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 9.2e-08 61.2 40 60.0
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 9.2e-08 61.2 204 35.3
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.2e-07 60.8 188 28.7
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.2e-07 60.8 42 57.1
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.6e-07 60.5 39 61.5
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.0e-07 60.1 172 29.1
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 2.0e-07 60.1 176 33.5
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.0e-07 60.1 141 39.7
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 2.0e-07 60.1 155 34.8
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 2.0e-07 60.1 40 62.5
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.0e-07 60.1 39 61.5
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 2.7e-07 59.7 88 50.0
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 2.7e-07 59.7 178 37.6
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.5e-07 59.3 161 29.8
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.5e-07 59.3 161 29.8
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.5e-07 59.3 88 39.8
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.6e-07 58.9 39 61.5
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 4.6e-07 58.9 82 54.9
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 6.0e-07 58.5 39 64.1
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 6.0e-07 58.5 169 33.7
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.0e-07 58.5 39 61.5
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 7.8e-07 58.2 206 32.0
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 7.8e-07 58.2 39 59.0
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.0e-06 57.8 205 34.1
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.3e-06 57.4 40 57.5
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.3e-06 57.4 39 59.0
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.3e-06 57.4 39 59.0
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.3e-06 57.4 39 59.0
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.7e-06 57.0 156 32.7
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.7e-06 57.0 200 33.5
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.7e-06 57.0 180 31.7
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.7e-06 57.0 194 27.8
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.3e-06 56.6 39 56.4
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.3e-06 56.6 39 56.4
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 2.3e-06 56.6 39 59.0
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 2.3e-06 56.6 40 60.0
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 3.0e-06 56.2 93 47.3
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.0e-06 56.2 46 54.3
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 3.0e-06 56.2 216 31.9
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.0e-06 56.2 42 52.4
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 3.9e-06 55.8 155 29.7
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 3.9e-06 55.8 86 41.9
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 5.0e-06 55.5 200 36.5
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 5.0e-06 55.5 214 31.3
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 6.6e-06 55.1 39 59.0


User provided reference genes

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