Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 0.0e+00 1123.2 591 100.0
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 1.8e-254 882.5 588 79.6
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 2.4e-174 616.3 607 54.2
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 5.4e-174 615.1 603 54.2
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.5e-173 612.5 616 53.1
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.5e-173 612.5 620 54.2
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 4.6e-173 612.1 627 52.6
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 4.6e-173 612.1 612 55.1
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 7.8e-173 611.3 613 53.3
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 7.8e-173 611.3 605 54.0
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.3e-172 609.8 587 54.7
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 3.9e-172 609.0 587 54.9
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 6.6e-172 608.2 587 54.9
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 7.3e-171 604.7 617 53.8
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 7.3e-171 604.7 618 52.4
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 9.6e-171 604.4 581 54.0
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 1.3e-170 604.0 580 56.4
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.1e-170 603.2 618 53.2
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 2.1e-170 603.2 619 52.7
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 2.1e-170 603.2 607 54.7
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 8.1e-170 601.3 582 55.7
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.0e-168 596.7 604 54.1
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 2.0e-168 596.7 603 54.4
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.6e-168 596.3 617 52.8
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 2.6e-168 596.3 607 54.5
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 5.8e-168 595.1 580 57.1
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 9.9e-168 594.3 612 53.3
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 9.9e-168 594.3 602 53.3
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.3e-167 594.0 579 55.4
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.3e-167 594.0 593 56.0
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.3e-167 594.0 615 51.7
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.3e-167 594.0 579 54.9
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.7e-167 593.6 574 54.9
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.9e-167 592.8 613 51.5
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 3.8e-167 592.4 583 55.9
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 4.9e-167 592.0 590 53.7
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 4.9e-167 592.0 593 53.0
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.5e-165 585.9 628 51.8
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 6.0e-165 585.1 595 55.3
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 6.0e-165 585.1 595 55.3
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 6.0e-165 585.1 548 56.0
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 6.0e-165 585.1 548 56.0
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 7.9e-165 584.7 622 51.3
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.7e-164 583.6 613 52.2
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 6.6e-164 581.6 602 53.2
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 6.6e-164 581.6 582 55.0
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.1e-163 580.9 607 51.6
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.5e-163 580.5 568 54.0
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 4.3e-163 578.9 581 55.1
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 5.6e-163 578.6 637 50.4
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 7.3e-163 578.2 590 52.2
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.3e-162 577.4 584 55.8
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.6e-162 577.0 576 53.8
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.1e-162 576.6 589 52.0
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 6.2e-162 575.1 570 54.4
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 6.2e-162 575.1 577 53.4
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-161 573.9 584 53.8
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 1.4e-161 573.9 579 55.8
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.8e-161 573.5 595 52.6
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 5.3e-161 572.0 624 52.4
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.0e-160 570.1 598 53.3
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 5.8e-160 568.5 633 50.6
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.3e-159 567.4 578 52.4
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.3e-159 567.4 590 52.2
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 2.9e-159 566.2 565 53.6
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 4.9e-159 565.5 609 50.7
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 3.2e-158 562.8 580 51.4
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 5.5e-158 562.0 557 54.9
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 2.1e-157 560.1 595 50.9
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 3.5e-157 559.3 567 54.3
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 6.0e-157 558.5 568 51.9
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 7.9e-157 558.1 605 50.4
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.0e-156 557.8 579 52.5
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.3e-156 557.4 570 51.9
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 2.3e-156 556.6 590 51.4
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 3.9e-156 555.8 615 51.1
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 3.9e-156 555.8 599 51.1
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 5.1e-156 555.4 614 51.8
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 6.7e-156 555.1 613 51.7
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.1e-155 554.3 600 50.2
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 4.3e-155 552.4 589 51.4
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 5.6e-155 552.0 598 50.2
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 9.6e-155 551.2 593 51.1
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 9.6e-155 551.2 568 51.4
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 2.8e-154 549.7 585 50.9
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.1e-153 546.2 640 49.2
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 4.0e-153 545.8 596 51.7
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 4.9e-151 538.9 599 50.6
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 6.5e-151 538.5 600 47.2
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 4.3e-147 525.8 585 51.3
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.6e-146 523.9 610 49.2
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 1.8e-145 520.4 594 49.0
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.8e-145 520.4 597 48.9
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 2.6e-144 516.5 626 47.8
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.3e-143 514.2 639 45.4
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.3e-143 514.2 629 48.6
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.7e-143 513.8 603 50.9
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.2e-143 513.5 567 52.7
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 5.5e-142 508.8 579 52.0
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.0e-140 504.6 627 46.6
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 8.2e-138 495.0 567 51.9
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.4e-132 477.6 608 47.0
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.3e-132 476.9 586 46.8
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 8.2e-130 468.4 574 48.1
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.1e-129 468.0 471 53.3
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.1e-129 468.0 494 51.0
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.8e-129 467.2 605 47.9
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 9.1e-129 464.9 566 48.8
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.1e-126 458.0 590 46.1
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.6e-115 420.2 616 42.5
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.2e-114 417.2 458 50.9
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.7e-109 399.4 473 50.1
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 5.9e-104 382.5 595 39.7
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.0e-92 345.1 468 42.9
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 1.6e-88 331.3 370 51.4
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.9e-81 307.8 346 52.0
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.9e-81 307.8 367 45.0
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.7e-80 303.9 266 61.7
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 6.0e-80 302.8 253 62.1
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 7.8e-72 275.8 363 44.9
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 5.8e-67 259.6 344 44.5
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 3.9e-63 246.9 469 34.8
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.6e-61 241.5 320 42.5
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 2.8e-61 240.7 331 43.2
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 5.1e-47 193.4 212 46.7
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 1.6e-45 188.3 118 77.1
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 5.8e-43 179.9 458 30.8
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 2.9e-42 177.6 207 43.5
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 8.4e-42 176.0 158 63.9
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 1.1e-41 175.6 98 87.8
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.2e-40 172.2 222 40.5
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.1e-40 171.4 251 37.1
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.8e-39 168.3 108 72.2
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.1e-37 161.4 200 41.0
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.1e-37 161.4 193 45.6
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 2.8e-37 161.0 147 63.9
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 8.1e-37 159.5 139 60.4
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.0e-34 152.5 144 59.0
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 4.2e-33 147.1 121 67.8
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 4.2e-33 147.1 133 57.9
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 9.3e-33 146.0 127 60.6
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.3e-31 142.1 187 35.8
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 6.7e-31 139.8 148 47.3
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.1e-30 139.0 272 33.1
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 3.1e-28 131.0 146 43.8
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 8.5e-26 122.9 120 57.5
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.1e-25 122.5 74 85.1
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 4.3e-22 110.5 177 37.9
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 9.7e-22 109.4 124 55.6
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.8e-21 107.8 117 58.1
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 3.7e-21 107.5 103 51.5
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 9.1e-20 102.8 65 69.2
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 1.3e-18 99.0 204 37.7
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.4e-17 95.5 162 36.4
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.2e-17 94.4 68 66.2
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 5.7e-14 83.6 69 62.3
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 1.7e-13 82.0 167 40.1
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 2.4e-12 78.2 80 56.2
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 3.2e-09 67.8 65 55.4
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 2.1e-08 65.1 139 29.5
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 2.3e-07 61.6 64 53.1
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 1.1e-06 59.3 48 54.2
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.0e-06 58.5 120 35.0
Mapoly0118s0038 Marchantia polymorpha HOM05D004142 ORTHO05D254901 9.7e-06 56.2 254 22.4


User provided reference genes

Program Settings