Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 1.8e-240 835.5 419 100.0
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 7.2e-181 637.5 414 76.3
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 6.7e-118 428.3 413 55.0
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 9.6e-117 424.5 416 54.6
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 2.8e-116 422.9 420 54.0
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 4.8e-116 422.2 419 54.9
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.1e-115 421.0 412 55.3
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.4e-115 419.9 416 53.6
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.2e-114 417.5 410 54.9
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.2e-114 417.5 411 53.5
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.0e-114 416.8 417 54.2
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 4.5e-114 415.6 410 52.7
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 6.5e-113 411.8 418 51.9
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 1.1e-112 411.0 412 50.7
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.9e-112 410.2 409 52.6
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 5.5e-112 408.7 410 54.4
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 2.1e-111 406.8 425 53.4
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 2.7e-111 406.4 453 49.9
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 3.5e-111 406.0 423 51.1
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.1e-109 401.0 414 53.9
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.9e-109 400.2 418 51.9
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 4.3e-109 399.1 419 51.1
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 5.7e-109 398.7 410 52.4
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 7.4e-109 398.3 414 50.5
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 7.4e-109 398.3 409 52.6
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 1.6e-108 397.1 410 51.2
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.6e-108 397.1 419 50.6
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.6e-108 397.1 411 53.5
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 2.2e-108 396.7 428 49.8
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.8e-108 396.4 413 51.3
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.7e-108 396.0 417 53.7
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 4.8e-108 395.6 414 51.4
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 6.3e-108 395.2 416 51.0
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 3.1e-107 392.9 419 50.8
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 3.1e-107 392.9 418 52.2
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.1e-107 392.5 419 50.8
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 4.1e-107 392.5 417 51.6
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 9.0e-107 391.3 412 52.7
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-106 391.0 419 51.1
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 2.0e-106 390.2 414 52.2
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.0e-105 387.9 413 49.6
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.3e-105 387.5 419 50.4
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.3e-105 387.5 411 51.8
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.2e-105 386.7 420 50.5
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.2e-105 386.7 420 50.5
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.2e-105 386.7 421 51.3
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 3.8e-105 386.0 412 51.9
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 3.8e-105 386.0 411 51.1
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 6.5e-105 385.2 418 51.2
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 8.5e-105 384.8 416 50.7
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 8.5e-105 384.8 416 50.5
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.1e-104 384.4 414 51.0
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.4e-104 384.0 417 51.1
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.4e-104 384.0 411 50.4
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.9e-104 383.6 411 51.3
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 2.5e-104 383.3 416 50.0
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 3.2e-104 382.9 418 49.3
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 9.3e-104 381.3 463 48.6
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.2e-103 380.9 409 49.6
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 6.1e-103 378.6 410 50.5
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 7.9e-103 378.3 420 50.7
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.0e-102 377.9 414 48.3
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.0e-102 377.9 418 50.0
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.1e-101 374.4 409 50.6
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.1e-101 374.4 426 46.9
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.5e-101 374.0 412 49.5
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.9e-101 373.6 413 48.9
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 2.5e-101 373.2 407 50.4
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.7e-100 370.5 409 49.4
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 2.2e-100 370.2 407 50.4
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.8e-100 369.8 420 48.1
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.8e-100 369.8 412 48.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 6.3e-100 368.6 407 48.9
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.1e-99 367.9 420 49.0
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.4e-99 367.5 409 48.9
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.2e-98 364.4 417 48.0
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.2e-98 364.4 415 49.6
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.0e-98 363.6 456 47.1
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.6e-98 363.2 450 48.2
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.6e-98 363.2 403 48.6
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.6e-98 363.2 407 48.4
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 3.4e-98 362.8 411 49.9
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 5.9e-98 362.1 411 49.1
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.7e-97 360.5 400 50.2
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 2.9e-97 359.8 415 48.9
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 5.0e-97 359.0 419 48.4
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 5.0e-97 359.0 408 49.3
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 1.4e-96 357.5 410 49.0
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 4.2e-96 355.9 443 47.6
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 3.6e-95 352.8 457 45.7
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 3.0e-94 349.7 408 47.5
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.0e-93 347.1 412 48.8
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.7e-92 344.0 414 46.6
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.4e-91 340.9 438 44.3
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 2.4e-91 340.1 412 48.5
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 5.9e-90 335.5 389 48.6
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 2.9e-89 333.2 417 48.0
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 2.5e-88 330.1 414 45.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.6e-87 326.2 416 46.4
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 6.1e-87 325.5 411 47.9
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 6.7e-86 322.0 411 47.7
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 6.7e-86 322.0 411 47.2
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.8e-84 316.6 442 41.9
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 3.7e-84 316.2 417 46.3
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 4.8e-84 315.8 413 47.0
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.5e-80 303.5 420 43.8
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.6e-79 300.8 305 53.1
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 1.6e-79 300.8 266 56.0
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 3.0e-78 296.6 417 41.5
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 8.8e-78 295.0 446 39.2
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 9.7e-77 291.6 419 42.0
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.3e-76 291.2 333 49.8
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 1.8e-75 287.3 465 38.7
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.2e-74 284.6 366 45.1
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.9e-73 280.0 270 53.3
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.2e-66 258.1 260 47.7
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 6.1e-63 245.7 386 39.4
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 3.4e-61 240.0 417 39.1
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.8e-59 234.2 401 40.9
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.0e-57 228.4 424 35.8
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.3e-57 227.3 256 51.2
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.5e-48 198.0 166 53.6
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 2.1e-47 194.1 232 48.7
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 2.0e-45 187.6 174 52.9
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.3e-41 174.9 315 38.7
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 8.1e-39 165.6 166 48.2
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 4.4e-37 159.8 155 51.0
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 3.2e-35 153.7 136 60.3
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.0e-33 148.7 174 42.5
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 2.3e-33 147.5 112 67.0
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 3.3e-32 143.7 265 37.7
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 4.3e-32 143.3 209 43.5
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 8.9e-30 135.6 104 57.7
Zm00001eb053120 Zea mays HOM05D063178 ORTHO05D005898 6.2e-23 112.8 123 50.4
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 3.4e-21 107.1 89 55.1
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 3.5e-18 97.1 189 36.0
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 3.0e-17 94.0 148 34.5
Zm00001eb154760 Zea mays HOM05D063178 ORTHO05D005898 1.9e-16 91.3 107 46.7
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 7.3e-16 89.4 114 44.7
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.8e-14 84.7 197 36.0
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 3.4e-13 80.5 60 68.3
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.4e-13 80.5 60 68.3
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 6.4e-12 76.3 82 46.3
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 1.2e-10 72.0 418 21.3
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.9e-10 69.3 192 31.8
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.0e-09 67.4 50 66.0
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-08 65.5 76 53.9
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-08 65.5 76 53.9


User provided reference genes

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