Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 0.0e+00 1138.3 667 100.0
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 1.9e-236 822.8 668 75.9
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 5.2e-149 532.3 680 50.9
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 3.4e-148 529.6 665 50.2
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 9.8e-148 528.1 682 48.4
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 2.2e-147 526.9 681 47.9
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 6.4e-147 525.4 682 49.1
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 2.1e-145 520.4 687 49.5
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 4.6e-145 519.2 683 49.0
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 1.7e-144 517.3 676 49.9
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 1.7e-144 517.3 674 50.3
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 8.6e-144 515.0 688 48.7
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.5e-143 514.2 667 52.0
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 2.1e-142 510.4 683 50.2
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 3.6e-142 509.6 680 53.1
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 3.6e-142 509.6 681 50.4
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 1.4e-141 507.7 681 52.4
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 3.1e-141 506.5 671 46.1
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 6.8e-141 505.4 688 49.0
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 1.5e-140 504.2 679 48.2
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 1.5e-140 504.2 687 48.8
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 2.6e-140 503.4 690 48.1
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 7.6e-140 501.9 707 47.4
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 9.9e-140 501.5 677 50.5
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 3.7e-139 499.6 678 48.1
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 6.4e-139 498.8 694 50.0
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 8.4e-139 498.4 672 49.1
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 1.9e-138 497.3 682 45.7
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 5.4e-138 495.7 694 50.0
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 7.1e-138 495.4 692 48.4
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 9.2e-138 495.0 670 49.4
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 1.2e-137 494.6 683 50.4
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 1.2e-137 494.6 588 54.1
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 2.7e-137 493.4 682 49.1
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 2.7e-137 493.4 687 49.9
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 2.3e-136 490.3 683 49.8
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 2.3e-136 490.3 679 49.9
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 5.1e-136 489.2 682 48.7
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 1.5e-135 487.6 682 45.5
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 1.9e-135 487.3 668 43.0
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 2.5e-135 486.9 687 48.9
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 3.3e-135 486.5 672 46.9
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 3.3e-135 486.5 688 45.6
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 3.3e-135 486.5 675 53.0
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 5.6e-135 485.7 694 47.6
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 7.3e-135 485.3 700 45.7
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 1.2e-134 484.6 685 48.6
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 1.2e-134 484.6 684 48.7
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 1.6e-134 484.2 683 44.4
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 2.1e-134 483.8 687 46.9
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 2.1e-134 483.8 679 47.9
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 2.8e-134 483.4 714 48.2
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 3.6e-134 483.0 687 48.3
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 5.2e-133 479.2 686 44.0
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 8.9e-133 478.4 688 47.5
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 8.9e-133 478.4 681 47.6
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 1.2e-132 478.0 590 49.8
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 1.2e-132 478.0 676 49.3
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 1.5e-132 477.6 686 44.2
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.5e-132 477.6 509 51.7
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 1.5e-132 477.6 678 44.4
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 3.4e-132 476.5 701 49.8
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 3.4e-132 476.5 674 45.7
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 4.4e-132 476.1 673 47.1
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 2.2e-131 473.8 508 51.2
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 1.1e-130 471.5 685 45.8
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 1.2e-129 468.0 501 51.7
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 1.6e-129 467.6 677 47.9
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 3.9e-128 463.0 518 50.4
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 6.6e-128 462.2 701 46.6
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 5.6e-127 459.1 534 48.5
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 7.3e-127 458.8 675 47.9
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 7.3e-127 458.8 688 44.8
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 1.3e-126 458.0 521 49.1
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 2.2e-123 447.2 507 49.5
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 1.4e-122 444.5 521 48.9
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 2.4e-122 443.7 515 49.1
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 5.4e-122 442.6 677 43.6
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 1.2e-121 441.4 674 44.5
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 2.7e-121 440.3 515 48.9
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 6.0e-121 439.1 517 48.5
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 7.9e-121 438.7 668 46.3
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 1.0e-120 438.3 508 49.0
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 6.6e-120 435.6 499 49.7
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 2.1e-118 430.6 711 44.0
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 8.1e-118 428.7 668 43.0
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 1.1e-117 428.3 501 49.1
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 6.0e-113 412.5 490 48.2
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 6.0e-113 412.5 490 48.2
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 1.1e-111 408.3 498 47.0
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 8.1e-110 402.1 511 43.6
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 8.1e-110 402.1 691 41.0
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 2.9e-107 393.7 515 44.7
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 7.1e-106 389.0 492 45.9
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 4.6e-105 386.3 436 48.6
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 3.0e-104 383.6 587 48.6
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 2.4e-101 374.0 602 47.2
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 8.2e-94 349.0 379 50.4
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 8.2e-94 349.0 619 45.2
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 3.6e-89 333.6 434 47.0
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 5.3e-85 319.7 516 40.7
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 1.2e-84 318.5 517 40.2
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 1.0e-80 305.4 359 49.0
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 8.8e-80 302.4 628 38.5
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 8.3e-62 242.7 568 33.3
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 3.1e-61 240.7 299 49.5
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 1.1e-53 215.7 218 51.4
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 9.2e-53 212.6 234 50.4
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 6.6e-43 179.9 232 46.1
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 1.6e-36 158.7 357 32.8
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 7.1e-29 133.3 568 27.1
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 1.8e-16 92.0 167 36.5
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 1.1e-10 72.8 197 50.3
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 1.5e-10 72.4 50 62.0


User provided reference genes

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