Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0548100 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D296200 9.2e-55 216.9 126 100.0
Os10g0162854 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 3.3e-28 128.6 118 63.6
Os08g0193700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 3.9e-13 78.6 121 47.1
Eucgr.A02202 Eucalyptus grandis HOM05D000011 ORTHO05D000157 8.4e-08 60.8 55 52.7
TAR633G1935 Trochodendron aralioides HOM05D000011 ORTHO05D000157 1.4e-07 60.1 66 39.4
FAN04G1178 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.9e-07 59.7 66 43.9
FAN13G0957 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.9e-07 59.7 66 43.9
Thecc.03G313200 Theobroma cacao HOM05D000011 ORTHO05D000157 1.9e-07 59.7 69 44.9
FAN08G1268 Fragaria x ananassa HOM05D000011 ORTHO05D000157 2.4e-07 59.3 66 43.9
RcHm_v2.0_Chr7g0212701 Rosa chinensis HOM05D000011 ORTHO05D000157 2.4e-07 59.3 66 43.9
Dinv29025 Davidia involucrata HOM05D000011 ORTHO05D000157 3.2e-07 58.9 67 46.3
Thecc.03G313000 Theobroma cacao HOM05D000011 ORTHO05D000157 4.2e-07 58.5 69 44.9
Oeu014573.1 Olea europaea HOM05D000011 ORTHO05D000157 5.5e-07 58.2 66 43.9
CSS0019751 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 9.3e-07 57.4 60 48.3
Os06g0698812 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 9.3e-07 57.4 93 34.4
PGR042G1395 Punica granatum HOM05D000011 ORTHO05D000157 9.3e-07 57.4 77 40.3
RcHm_v2.0_Chr7g0212511 Rosa chinensis HOM05D000011 ORTHO05D000157 9.3e-07 57.4 66 42.4
RcHm_v2.0_Chr7g0212691 Rosa chinensis HOM05D000011 ORTHO05D000157 9.3e-07 57.4 66 42.4
FvH4_5g23450 Fragaria vesca HOM05D000011 ORTHO05D000157 1.2e-06 57.0 66 40.9
FAN18G2053 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.2e-06 57.0 66 40.9
FAN18G2058 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.2e-06 57.0 66 40.9
Dinv01247 Davidia involucrata HOM05D000011 ORTHO05D000157 1.6e-06 56.6 72 44.4
Prupe.5G025100 Prunus persica HOM05D000011 ORTHO05D000157 1.6e-06 56.6 69 42.0
Eucgr.E01306 Eucalyptus grandis HOM05D000011 ORTHO05D000157 2.1e-06 56.2 60 43.3
TPR.G19455 Trifolium pratense HOM05D000011 ORTHO05D000157 2.1e-06 56.2 91 37.4
Oeu006177.1 Olea europaea HOM05D000011 ORTHO05D000157 2.7e-06 55.8 56 46.4
Prupe.5G025300 Prunus persica HOM05D000011 ORTHO05D000157 2.7e-06 55.8 69 44.9
TAR362G0141 Trochodendron aralioides HOM05D000011 ORTHO05D000157 2.7e-06 55.8 66 40.9
Haze_04644 Corylus avellana HOM05D000011 ORTHO05D000157 3.5e-06 55.5 54 46.3
Dinv19542 Davidia involucrata HOM05D000011 ORTHO05D000157 3.5e-06 55.5 60 43.3
Eucgr.H04242 Eucalyptus grandis HOM05D000011 ORTHO05D000157 3.5e-06 55.5 54 48.1
Nn2g15236 Nelumbo nucifera HOM05D000011 ORTHO05D005387 3.5e-06 55.5 54 48.1
Sabra01G0103900 Salix brachista HOM05D000011 ORTHO05D000157 3.5e-06 55.5 93 35.5
TAR364G0002 Trochodendron aralioides HOM05D000011 ORTHO05D000157 3.5e-06 55.5 66 40.9
CSS0012043 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 4.6e-06 55.1 82 39.0
Cfa006199 Carpinus fangiana HOM05D000011 ORTHO05D000157 4.6e-06 55.1 66 43.9
MD17G1163600 Malus domestica HOM05D000011 ORTHO05D000157 4.6e-06 55.1 69 42.0
Cfa006198 Carpinus fangiana HOM05D000011 ORTHO05D000157 6.0e-06 54.7 66 43.9
Duzib068G0532 Durio zibethinus HOM05D000011 ORTHO05D000157 6.0e-06 54.7 72 38.9
Eucgr.E01302 Eucalyptus grandis HOM05D000011 ORTHO05D000157 6.0e-06 54.7 60 41.7
Glyma.01G010500 Glycine max HOM05D000011 ORTHO05D000157 6.0e-06 54.7 55 47.3
Prupe.5G025200 Prunus persica HOM05D000011 ORTHO05D000157 6.0e-06 54.7 68 42.6
Prupe.5G025600 Prunus persica HOM05D000011 ORTHO05D000157 6.0e-06 54.7 60 43.3
RcHm_v2.0_Chr7g0212531 Rosa chinensis HOM05D000011 ORTHO05D005387 6.0e-06 54.7 60 40.0
Eucgr.E01291 Eucalyptus grandis HOM05D000011 ORTHO05D000157 7.9e-06 54.3 49 51.0
Phvul.002G133400 Phaseolus vulgaris HOM05D000011 ORTHO05D000157 7.9e-06 54.3 54 46.3
Potri.001G134300 Populus trichocarpa HOM05D000011 ORTHO05D000157 7.9e-06 54.3 93 33.3
Potri.001G134450 Populus trichocarpa HOM05D000011 ORTHO05D000157 7.9e-06 54.3 93 33.3


User provided reference genes

Program Settings