Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 6.8e-287 989.9 498 100.0
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 1.5e-222 776.2 498 76.3
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 1.1e-191 673.7 493 64.9
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 2.0e-190 669.5 493 64.1
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 3.9e-189 665.2 491 64.6
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 3.3e-188 662.1 491 63.5
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 4.3e-188 661.8 491 64.6
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 7.3e-188 661.0 489 64.4
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 1.6e-187 659.8 489 63.6
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 3.6e-187 658.7 493 63.9
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 3.1e-186 655.6 491 63.3
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 2.0e-185 652.9 497 63.8
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 4.4e-185 651.7 483 64.6
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 4.4e-185 651.7 491 64.2
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 5.8e-185 651.4 489 63.4
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 9.8e-185 650.6 499 63.3
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.3e-184 650.2 491 63.5
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 1.3e-184 650.2 481 65.9
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 2.9e-184 649.0 496 63.5
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.1e-183 647.1 491 63.5
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 1.4e-183 646.7 484 63.8
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 2.4e-183 646.0 491 63.3
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 3.2e-183 645.6 492 62.6
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 4.6e-182 641.7 488 61.9
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 6.0e-182 641.3 482 63.9
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 7.8e-182 641.0 468 65.2
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 1.3e-181 640.2 493 62.3
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 1.7e-181 639.8 490 62.2
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 3.9e-181 638.6 490 63.3
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 6.6e-181 637.9 492 61.8
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 1.1e-180 637.1 492 61.8
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 1.1e-180 637.1 491 62.3
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 3.3e-180 635.6 493 61.3
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 4.3e-180 635.2 490 62.0
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 5.6e-180 634.8 492 61.0
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 1.6e-179 633.3 492 61.8
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 4.7e-179 631.7 491 62.7
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 2.3e-178 629.4 467 64.7
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 4.0e-178 628.6 496 62.7
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 4.0e-178 628.6 491 61.9
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 1.2e-177 627.1 488 61.1
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 1.3e-176 623.6 496 60.5
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 1.7e-176 623.2 472 62.7
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 2.9e-176 622.5 490 61.4
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 3.7e-176 622.1 487 62.0
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 6.4e-176 621.3 468 64.1
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 1.4e-175 620.2 490 61.2
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 9.2e-175 617.5 497 60.2
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 9.2e-175 617.5 497 60.2
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 1.6e-174 616.7 496 59.7
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.6e-174 616.7 468 63.9
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.7e-174 615.9 508 60.2
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.7e-174 615.9 508 60.2
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.7e-174 615.9 508 60.2
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 3.5e-174 615.5 492 58.9
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 4.6e-174 615.1 471 64.3
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 4.6e-174 615.1 490 60.6
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 4.6e-174 615.1 501 60.5
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 6.0e-174 614.8 490 60.6
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.0e-173 614.0 508 59.8
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 3.0e-173 612.5 492 60.0
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 3.9e-173 612.1 494 60.9
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 1.9e-172 609.8 543 56.4
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 3.3e-172 609.0 493 61.1
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 7.3e-172 607.8 491 58.5
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 9.5e-172 607.4 543 56.2
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 1.4e-170 603.6 526 57.2
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 8.4e-168 594.3 497 58.8
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 1.1e-167 594.0 456 61.2
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.0e-165 587.4 521 57.0
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 9.6e-164 580.9 484 58.1
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 4.7e-163 578.6 524 54.2
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 4.4e-161 572.0 488 59.6
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 4.9e-160 568.5 496 57.9
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 1.4e-159 567.0 453 60.3
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 4.6e-158 562.0 521 55.9
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 1.7e-157 560.1 600 50.3
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 1.9e-156 556.6 514 55.6
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 5.6e-156 555.1 436 62.6
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 1.7e-152 543.5 487 57.1
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 7.1e-151 538.1 416 63.2
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 2.7e-150 536.2 484 55.6
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 4.6e-150 535.4 496 54.8
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 5.1e-149 531.9 513 52.0
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 1.1e-148 530.8 410 62.0
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 9.3e-143 511.1 480 51.5
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 4.3e-140 502.3 482 51.2
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 4.3e-140 502.3 519 51.8
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 2.8e-139 499.6 395 59.2
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.5e-137 492.3 426 58.2
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 1.4e-130 470.7 342 67.8
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 9.0e-130 468.0 396 56.1
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.7e-128 463.8 430 54.4
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 6.5e-128 461.8 490 49.6
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 6.1e-126 455.3 328 66.8
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 4.3e-124 449.1 361 62.9
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 1.8e-122 443.7 483 49.3
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 1.3e-115 421.0 531 45.2
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 1.3e-115 421.0 689 37.6
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 7.9e-110 401.7 468 48.7
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 3.7e-99 366.3 983 28.9
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 5.3e-98 362.5 303 58.7
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 5.3e-98 362.5 347 52.2
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 1.0e-85 321.6 495 39.6
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 1.3e-83 314.7 426 45.3
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 4.5e-81 306.2 553 37.1
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 1.2e-73 281.6 251 55.8
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 1.7e-64 251.1 491 34.2
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 1.5e-63 248.1 309 46.6
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 9.5e-63 245.4 180 63.3
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.6e-62 244.6 199 60.8
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 4.6e-49 199.9 161 60.9
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.1e-48 196.4 199 52.8
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 1.4e-37 161.8 160 51.9
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 2.0e-36 157.9 116 67.2
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 7.4e-31 139.4 101 56.4
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 1.8e-24 118.2 67 77.6
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 6.7e-24 116.3 139 44.6
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 1.9e-18 98.2 80 61.2
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.5e-15 88.6 64 64.1
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 2.4e-13 81.3 43 83.7
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 6.9e-13 79.7 79 44.3
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 2.2e-11 74.7 45 75.6
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.9e-11 74.3 48 68.8
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 3.6e-09 67.4 52 59.6
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 1.0e-08 65.9 63 50.8
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 2.8e-06 57.8 228 23.2
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.8e-06 57.8 224 21.9
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.8e-06 57.8 224 21.9


User provided reference genes

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