Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0535400 Oryza sativa ssp. japonica HOM05D007031 ORTHO05D008815 5.8e-94 347.4 162 100.0
Cc08_g12500 Coffea canephora HOM05D007031 ORTHO05D008815 1.8e-55 219.5 145 71.0
CAN.G1227.14 Capsicum annuum HOM05D007031 ORTHO05D008815 2.4e-55 219.2 153 68.0
Gohir.D08G188900 Gossypium hirsutum HOM05D007031 ORTHO05D008815 2.4e-55 219.2 137 72.3
Gorai.004G199000 Gossypium raimondii HOM05D007031 ORTHO05D008815 2.4e-55 219.2 137 72.3
Migut.E00966 Erythranthe guttata HOM05D007031 ORTHO05D008815 2.0e-54 216.1 140 69.3
Migut.E01683 Erythranthe guttata HOM05D007031 ORTHO05D008815 2.6e-54 215.7 140 69.3
Solyc08g007380.4 Solanum lycopersicum HOM05D007031 ORTHO05D008815 3.4e-54 215.3 137 71.5
Sopen08g003330 Solanum pennellii HOM05D007031 ORTHO05D008815 3.4e-54 215.3 137 71.5
ECA232G3888 Erigeron canadensis HOM05D007031 ORTHO05D008815 1.7e-53 213.0 138 68.1
Glyma.11G032300 Glycine max HOM05D007031 ORTHO05D008815 2.2e-53 212.6 137 70.8
TWI60G0154 Tripterygium wilfordii HOM05D007031 ORTHO05D008815 2.9e-53 212.2 137 68.6
PSO724G0679 Papaver somniferum HOM05D007031 ORTHO05D008815 6.5e-53 211.1 138 68.8
PSO386G0128 Papaver somniferum HOM05D007031 ORTHO05D008815 8.4e-53 210.7 138 68.8
arahy.Tifrunner.gnm1.ann1.R85P7C Arachis hypogaea HOM05D007031 ORTHO05D008815 1.1e-52 210.3 138 71.7
Actinidia14432 Actinidia chinensis HOM05D007031 ORTHO05D008815 1.4e-52 209.9 137 71.5
arahy.Tifrunner.gnm1.ann1.WL6NYT Arachis hypogaea HOM05D007031 ORTHO05D008815 1.9e-52 209.5 138 71.7
TPR.G25905 Trifolium pratense HOM05D007031 ORTHO05D008815 3.2e-52 208.8 138 69.6
Dinv21635 Davidia involucrata HOM05D007031 ORTHO05D008815 4.2e-52 208.4 137 70.1
Duzib205G0920 Durio zibethinus HOM05D007031 ORTHO05D008815 4.2e-52 208.4 137 70.1
MSTRG.13772 Avicennia marina HOM05D007031 ORTHO05D008815 7.2e-52 207.6 143 66.4
Lsat_1_v5_gn_5_187960 Lactuca sativa HOM05D007031 ORTHO05D008815 1.6e-51 206.5 138 67.4
Phvul.002G062701 Phaseolus vulgaris HOM05D007031 ORTHO05D008815 3.5e-51 205.3 137 68.6
Lj2g0002187 Lotus japonicus HOM05D007031 ORTHO05D008815 4.6e-51 204.9 137 69.3
TAR636G3191 Trochodendron aralioides HOM05D007031 ORTHO05D008815 4.6e-51 204.9 137 67.9
Psat2g177560 Pisum sativum HOM05D007031 ORTHO05D008815 6.1e-51 204.5 137 67.9
CSS0040909 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 1.0e-50 203.8 137 67.9
DCAR_027778 Daucus carota HOM05D007031 ORTHO05D008815 1.0e-50 203.8 143 65.7
Lj2A217G30 Lonicera japonica HOM05D007031 ORTHO05D008815 1.3e-50 203.4 137 66.4
Potri.003G076400 Populus trichocarpa HOM05D007031 ORTHO05D008815 2.3e-50 202.6 137 67.9
HPP92_021039 Vanilla planifolia HOM05D007031 ORTHO05D008815 3.0e-50 202.2 145 66.9
HPP92_027426 Vanilla planifolia HOM05D007031 ORTHO05D008815 3.0e-50 202.2 145 66.9
Eucgr.E00427 Eucalyptus grandis HOM05D007031 ORTHO05D008815 3.9e-50 201.8 136 67.6
CDE09G0628 Ceratophyllum demersum HOM05D005321 ORTHO05D006360 6.7e-50 201.1 138 64.5
THA.LOC104815489 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 6.7e-50 201.1 137 67.2
Ciclev10022693m.g Citrus clementina HOM05D007031 ORTHO05D008815 1.1e-49 200.3 137 65.7
Carub.0007s2484 Capsella rubella HOM05D007031 ORTHO05D008815 1.5e-49 199.9 137 67.2
Gohir.A08G170700 Gossypium hirsutum HOM05D007031 ORTHO05D008815 1.5e-49 199.9 141 67.4
Peaxi162Scf00102g01143 Petunia axillaris HOM05D007031 ORTHO05D008815 1.5e-49 199.9 118 76.3
Aqoxy5G01014 Aquilegia oxysepala HOM05D007031 ORTHO05D008815 2.5e-49 199.1 138 66.7
Lalb_Chr09g0324411 Lupinus albus HOM05D007031 ORTHO05D008815 3.3e-49 198.7 137 67.2
BcaNung00171 Brassica carinata HOM05D007031 ORTHO05D008815 4.3e-49 198.4 137 67.2
AT4G16566 Arabidopsis thaliana HOM05D007031 ORTHO05D008815 1.3e-48 196.8 137 66.4
Hma1.2p1_0316F.1_g123210 Hydrangea macrophylla HOM05D007031 ORTHO05D008815 1.3e-48 196.8 117 73.5
BcaC09g50373 Brassica carinata HOM05D007031 ORTHO05D008815 1.6e-48 196.4 137 66.4
Cfa012711 Carpinus fangiana HOM05D007031 ORTHO05D008815 2.2e-48 196.1 137 64.2
CARHR223050 Cardamine hirsuta HOM05D007031 ORTHO05D008815 2.8e-48 195.7 137 64.2
FAN13G0327 Fragaria x ananassa HOM05D007031 ORTHO05D008815 6.3e-48 194.5 137 63.5
Zm00001eb427450 Zea mays HOM05D007031 ORTHO05D008815 1.8e-47 193.0 101 83.2
FvH4_5g18810 Fragaria vesca HOM05D007031 ORTHO05D008815 2.4e-47 192.6 137 62.8
FAN18G3883 Fragaria x ananassa HOM05D007031 ORTHO05D008815 2.4e-47 192.6 137 62.8
RcHm_v2.0_Chr7g0203161 Rosa chinensis HOM05D007031 ORTHO05D008815 2.4e-47 192.6 143 61.5
BolC1t02559H Brassica oleracea HOM05D007031 ORTHO05D008815 3.1e-47 192.2 138 65.9
Thhalv10026497m.g Eutrema salsugineum HOM05D007031 ORTHO05D008815 3.1e-47 192.2 137 64.2
FAN08G1843 Fragaria x ananassa HOM05D007031 ORTHO05D008815 4.1e-47 191.8 143 60.1
ATR0317G125 Amborella trichopoda HOM05D007031 ORTHO05D008815 6.9e-47 191.0 139 64.0
AL7G38260 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 6.9e-47 191.0 137 64.2
CANSAT21G0077 Cannabis sativa HOM05D007031 ORTHO05D008815 2.6e-46 189.1 137 62.8
unitig_699.g19776 Utricularia gibba HOM05D007031 ORTHO05D008815 2.6e-46 189.1 118 70.3
BraA01t02001Z Brassica rapa HOM05D007031 ORTHO05D008815 3.4e-46 188.7 138 65.2
Aa31LG2G12690 Aethionema arabicum HOM05D007031 ORTHO05D008815 7.7e-46 187.6 137 61.3
AL7G38210 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 1.7e-45 186.4 119 69.7
Atru.chr9.1322 Acer truncatum HOM05D007031 ORTHO05D008815 2.2e-45 186.0 116 69.8
CiPaw.12G109600 Carya illinoinensis HOM05D007031 ORTHO05D008815 2.2e-45 186.0 137 60.6
MBI04_g09491_MAGBIO Magnolia biondii HOM05D007031 ORTHO05D008815 2.2e-45 186.0 117 69.2
EL10Ac5g13074 Beta vulgaris HOM05D007031 ORTHO05D008815 1.6e-43 179.9 170 51.2
SEGI_08804 Sequoiadendron giganteum HOM05D007031 ORTHO05D008815 1.6e-43 179.9 141 57.4
BcaNung02861 Brassica carinata HOM05D007031 ORTHO05D008815 3.6e-43 178.7 132 63.6
CSS0002961 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 7.9e-43 177.6 140 61.4
Sed0003740 Sechium edule HOM05D007031 ORTHO05D008815 7.9e-43 177.6 144 61.1
CsaV3_5G004200 Cucumis sativus L. HOM05D007031 ORTHO05D008815 1.1e-41 173.7 139 62.6
Hund14533 Selenicereus undatus HOM05D007031 ORTHO05D008815 1.1e-39 167.2 101 74.3
VMungo1215G1202 Vigna mungo HOM05D007031 ORTHO05D008815 1.8e-39 166.4 134 59.7
ClCG01G004020 Citrullus lanatus HOM05D007031 ORTHO05D008815 5.3e-39 164.9 166 53.0
Manes.02G039100 Manihot esculenta HOM05D007031 ORTHO05D008815 1.2e-38 163.7 114 67.5
AUR62042788 Chenopodium quinoa HOM05D007031 ORTHO05D008815 3.4e-38 162.2 112 69.6
Sabra03G0047000 Salix brachista HOM05D007031 ORTHO05D008815 4.5e-38 161.8 154 55.2
vmacro16391 Vaccinium macrocarpon HOM05D007031 ORTHO05D008815 2.2e-37 159.5 102 74.5
MD04G1063700 Malus domestica HOM05D007031 ORTHO05D008815 2.9e-37 159.1 115 61.7
QL12p012249 Quercus lobata HOM05D007031 ORTHO05D008815 8.5e-37 157.5 150 52.7
A01p20650 Brassica napus HOM05D007031 ORTHO05D008815 2.7e-35 152.5 120 61.7
C01p26150 Brassica napus HOM05D007031 ORTHO05D008815 6.1e-35 151.4 115 62.6
FAN14G5160 Fragaria x ananassa HOM05D007031 ORTHO05D008815 6.1e-35 151.4 140 50.7
Pp3c5_26880 Physcomitrium patens HOM05D007031 ORTHO05D008815 1.8e-34 149.8 141 48.9
AUR62007512 Chenopodium quinoa HOM05D007031 ORTHO05D008815 2.3e-34 149.4 89 76.4
BolC7t45328H Brassica oleracea HOM05D007031 ORTHO05D008815 3.9e-34 148.7 122 59.8
SMO274G0074 Selaginella moellendorffii HOM05D007031 ORTHO05D008815 2.6e-33 146.0 136 50.7
Nitab4.5_0000712g0190 Nicotiana tabacum HOM05D007031 ORTHO05D008815 7.4e-33 144.4 166 47.0
Sp7g15180 Schrenkiella parvula HOM05D007031 ORTHO05D008815 9.7e-33 144.1 137 51.1
MELO3C005535.2 Cucumis melo HOM05D007031 ORTHO05D008815 1.8e-31 139.8 103 66.0
SMO134G0120 Selaginella moellendorffii HOM05D000076 ORTHO05D001279 9.1e-31 137.5 115 53.0
CiPaw.11G153700 Carya illinoinensis HOM05D007031 ORTHO05D008815 4.5e-30 135.2 101 60.4
BcaC06g33496 Brassica carinata HOM05D007031 ORTHO05D008815 8.0e-27 124.4 93 64.5
Nn6g33971 Nelumbo nucifera HOM05D007031 ORTHO05D008815 1.4e-26 123.6 77 72.7
Oeu062969.1 Olea europaea HOM05D007031 ORTHO05D008815 3.0e-26 122.5 137 46.0
Prupe.5G068700 Prunus persica HOM05D007031 ORTHO05D008815 3.0e-26 122.5 143 44.1
CSS0026472 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 5.2e-26 121.7 76 71.1
SalBow6G3941 Salvia bowleyana HOM05D007031 ORTHO05D008815 8.8e-26 120.9 90 62.2
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 1.1e-25 120.6 110 55.5
FAN02G0786 Fragaria x ananassa HOM05D007031 ORTHO05D008815 2.0e-25 119.8 107 54.2
FAN04G1478 Fragaria x ananassa HOM05D007031 ORTHO05D008815 7.5e-25 117.9 77 66.2
THA.LOC104815507 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 1.3e-24 117.1 73 69.9
Sc22g0000840 Simmondsia chinensis HOM05D007031 ORTHO05D008815 2.2e-24 116.3 85 63.5
Pp3c6_3420 Physcomitrium patens HOM05D029721 ORTHO05D008815 2.8e-24 115.9 129 45.7
Haze_07923 Corylus avellana HOM05D007031 ORTHO05D008815 4.8e-24 115.2 140 45.0
Cre03.g169200 Chlamydomonas reinhardtii HOM05D007031 ORTHO05D008815 8.2e-24 114.4 136 44.1
GSVIVG01001319001 Vitis vinifera HOM05D007031 ORTHO05D008815 1.1e-23 114.0 84 65.5
MCO15G691 Micromonas commoda HOM05D007031 ORTHO05D008815 2.0e-22 109.8 132 41.7
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 1.3e-21 107.1 109 51.4
Medtr5g012525 Medicago truncatula HOM05D007031 ORTHO05D008815 2.5e-20 102.8 73 64.4
Nitab4.5_0002225g0110 Nicotiana tabacum HOM05D007031 ORTHO05D008815 3.2e-20 102.4 143 46.2
SEGI_18261 Sequoiadendron giganteum HOM05D007031 ORTHO05D008815 4.7e-19 98.6 98 50.0
Thecc.03G252200 Theobroma cacao HOM05D007031 ORTHO05D008815 5.7e-17 91.7 73 57.5
FAN05G5584 Fragaria x ananassa HOM05D007031 ORTHO05D008815 4.2e-12 75.5 59 57.6


User provided reference genes

Program Settings