Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 5.7e-94 348.6 179 100.0
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 6.6e-74 282.0 177 80.8
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.1e-73 281.2 175 80.0
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 1.1e-73 281.2 171 83.0
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 3.3e-73 279.6 171 82.5
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 5.6e-73 278.9 171 81.9
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 7.3e-73 278.5 175 78.3
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 7.3e-73 278.5 171 81.9
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 9.5e-73 278.1 171 81.3
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 1.2e-72 277.7 171 81.3
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 1.2e-72 277.7 171 81.3
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 1.6e-72 277.3 171 81.3
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.6e-72 277.3 169 81.7
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 2.1e-72 276.9 169 81.7
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 2.1e-72 276.9 172 84.3
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 2.8e-72 276.6 175 78.3
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 3.6e-72 276.2 171 80.7
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 3.6e-72 276.2 169 82.2
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 3.6e-72 276.2 169 82.8
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 6.2e-72 275.4 171 80.7
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 6.2e-72 275.4 171 80.1
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 8.1e-72 275.0 171 80.1
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.1e-71 274.6 171 80.1
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.1e-71 274.6 171 80.1
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.4e-71 274.2 168 79.8
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 1.4e-71 274.2 171 80.7
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 3.1e-71 273.1 169 81.1
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.1e-71 273.1 169 81.1
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 3.1e-71 273.1 168 81.5
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 3.1e-71 273.1 171 79.5
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 4.0e-71 272.7 171 79.5
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 4.0e-71 272.7 175 77.7
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 4.0e-71 272.7 175 77.7
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 4.0e-71 272.7 169 81.1
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 5.2e-71 272.3 171 78.9
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 8.9e-71 271.6 172 80.8
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.2e-70 271.2 170 80.6
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.2e-70 271.2 171 78.9
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.5e-70 270.8 169 80.5
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.5e-70 270.8 169 81.1
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.5e-70 270.8 170 80.6
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.0e-70 270.4 177 76.8
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 2.6e-70 270.0 171 77.8
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 2.6e-70 270.0 171 77.8
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.4e-70 269.6 175 77.1
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 4.4e-70 269.2 171 76.6
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.7e-69 267.3 169 79.3
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 2.2e-69 266.9 171 76.6
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 2.9e-69 266.5 174 78.2
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 1.1e-68 264.6 171 78.9
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 5.4e-68 262.3 171 76.6
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.6e-67 260.8 171 75.4
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 2.7e-67 260.0 174 75.3
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 3.5e-67 259.6 168 79.8
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 4.6e-67 259.2 170 75.9
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 4.6e-67 259.2 175 73.7
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.0e-66 258.1 170 75.3
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.0e-66 258.1 170 75.3
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 1.0e-66 258.1 170 75.3
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.0e-66 258.1 170 75.3
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.0e-66 258.1 170 75.3
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.0e-66 258.1 174 74.7
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 3.0e-66 256.5 169 76.3
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 6.6e-66 255.4 170 75.3
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 8.6e-66 255.0 170 75.9
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 8.6e-66 255.0 170 75.9
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.9e-65 253.8 168 75.6
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.9e-65 253.8 168 75.6
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 3.3e-65 253.1 168 75.0
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 4.3e-65 252.7 171 76.6
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 7.3e-65 251.9 171 74.3
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 7.3e-65 251.9 168 75.6
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 6.2e-64 248.8 169 75.7
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 2.4e-63 246.9 199 64.8
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 2.4e-63 246.9 204 65.7
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 4.0e-63 246.1 220 60.9
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 8.9e-63 245.0 170 70.6
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.5e-62 244.2 167 74.9
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 2.0e-62 243.8 171 70.2
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 3.4e-62 243.0 170 70.6
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 4.9e-61 239.2 171 72.5
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 8.4e-61 238.4 170 72.4
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 9.2e-60 235.0 171 70.2
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.2e-59 234.6 196 63.8
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 2.7e-59 233.4 146 82.2
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 6.0e-59 232.3 167 71.3
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 1.0e-58 231.5 170 70.0
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 3.9e-58 229.6 149 78.5
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 3.3e-57 226.5 168 69.6
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.8e-55 220.7 149 77.2
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 5.2e-55 219.2 156 73.1
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 6.9e-55 218.8 192 61.5
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 1.2e-54 218.0 171 64.3
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 1.5e-54 217.6 149 76.5
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 7.6e-54 215.3 149 75.2
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 7.8e-51 205.3 150 72.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.3e-48 198.0 130 76.2
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.0e-42 178.3 119 78.2
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 3.7e-32 143.3 72 90.3
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 3.4e-30 136.7 92 78.3
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.0e-29 135.2 107 65.4
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.9e-29 133.7 107 64.5
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 2.1e-27 127.5 72 80.6
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.3e-26 124.0 64 89.1
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 3.9e-26 123.2 105 63.8
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 6.7e-26 122.5 124 58.1
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 1.3e-24 118.2 173 39.3
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 4.8e-24 116.3 165 43.0
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 7.7e-22 109.0 66 68.2
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 6.7e-18 95.9 89 65.2
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 3.3e-17 93.6 67 73.1
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 7.4e-17 92.4 77 68.8
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.7e-16 91.3 77 67.5
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 9.1e-15 85.5 68 69.1
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.2e-12 77.0 64 65.6
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 1.0e-10 72.0 51 76.5
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 2.0e-09 67.8 67 58.2
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 1.3e-08 65.1 39 82.1
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.3e-08 65.1 32 87.5
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 7.0e-07 59.3 38 71.1
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 9.1e-07 58.9 47 68.1


User provided reference genes

Program Settings