Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 7.8e-112 407.1 206 100.0
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 6.7e-87 324.3 195 82.6
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 7.7e-67 257.7 186 68.3
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 5.7e-62 241.5 183 65.6
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 9.7e-62 240.7 186 62.9
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.8e-61 239.2 196 62.8
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 4.8e-61 238.4 189 63.0
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.4e-60 236.9 185 64.3
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 3.1e-60 235.7 182 64.3
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 6.9e-60 234.6 186 60.8
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.2e-59 233.8 188 62.2
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.5e-59 233.4 186 61.8
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.0e-59 233.0 190 59.5
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.6e-59 232.6 187 61.5
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 2.6e-59 232.6 186 60.2
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 4.5e-59 231.9 188 62.2
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 5.9e-59 231.5 186 61.8
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 5.9e-59 231.5 186 61.3
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 7.7e-59 231.1 188 62.2
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 7.7e-59 231.1 188 60.1
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 2.2e-58 229.6 194 60.3
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 2.2e-58 229.6 186 60.2
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 5.0e-58 228.4 198 59.6
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 6.5e-58 228.0 187 62.0
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 8.5e-58 227.6 183 61.7
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 8.5e-58 227.6 196 58.2
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.9e-57 226.5 198 59.6
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 1.9e-57 226.5 187 61.5
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 2.5e-57 226.1 196 59.2
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 5.5e-57 224.9 186 57.5
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 5.5e-57 224.9 185 61.1
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 7.2e-57 224.6 202 60.4
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 7.2e-57 224.6 183 61.2
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 7.2e-57 224.6 182 63.2
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 9.4e-57 224.2 188 59.0
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 9.4e-57 224.2 186 58.6
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.2e-56 223.8 183 61.2
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 1.6e-56 223.4 195 60.0
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.1e-56 223.0 186 60.2
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 2.7e-56 222.6 187 58.8
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 4.7e-56 221.9 189 60.3
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.0e-55 220.7 166 66.9
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 1.0e-55 220.7 186 60.8
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.4e-55 220.3 197 57.4
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.4e-55 220.3 198 60.1
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 3.0e-55 219.2 183 59.6
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 3.0e-55 219.2 186 58.1
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 3.9e-55 218.8 166 66.3
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 6.7e-55 218.0 185 58.9
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 6.7e-55 218.0 185 60.0
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.1e-54 217.2 197 56.3
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.5e-54 216.9 186 61.8
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.6e-54 216.1 181 59.1
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 3.3e-54 215.7 189 58.7
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 5.7e-54 214.9 196 57.7
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 9.7e-54 214.2 183 61.2
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 4.8e-53 211.8 194 58.2
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.3e-53 211.5 183 59.0
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 6.3e-53 211.5 185 58.4
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 8.2e-53 211.1 184 61.4
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.1e-52 210.7 185 58.4
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.1e-52 210.7 185 58.9
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.4e-52 210.3 186 58.1
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.4e-52 210.3 186 57.0
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.4e-52 210.3 205 53.7
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 1.8e-52 209.9 185 58.4
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 1.8e-52 209.9 199 58.3
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 2.4e-52 209.5 185 58.4
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 2.4e-52 209.5 185 58.4
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 2.4e-52 209.5 185 58.4
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 3.1e-52 209.1 198 56.1
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 3.1e-52 209.1 196 56.1
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 5.3e-52 208.4 196 57.1
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 9.1e-52 207.6 190 57.4
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 9.1e-52 207.6 190 57.4
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.2e-51 207.2 187 58.3
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.0e-50 204.1 183 57.4
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.0e-50 204.1 184 57.6
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.3e-50 203.8 190 56.8
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 2.2e-50 203.0 185 56.2
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 8.5e-50 201.1 204 54.4
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.9e-49 199.9 189 56.6
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 1.9e-49 199.9 184 55.4
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 3.2e-49 199.1 176 58.0
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.2e-48 197.2 184 56.0
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.6e-48 196.8 173 59.0
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 2.1e-48 196.4 184 56.0
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.4e-44 183.0 183 51.9
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 4.1e-44 182.2 150 62.0
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 8.5e-42 174.5 165 57.0
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.4e-39 167.2 193 49.2
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 3.4e-38 162.5 191 49.2
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.3e-37 160.6 149 55.0
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 3.1e-36 156.0 181 47.0
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 2.1e-32 143.3 183 46.4
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 8.9e-31 137.9 97 68.0
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 8.3e-29 131.3 92 71.7
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 9.2e-28 127.9 90 70.0
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 1.9e-25 120.2 81 75.3
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 4.0e-23 112.5 94 59.6
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 2.2e-21 106.7 107 50.5
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 3.2e-20 102.8 92 57.6
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.0e-18 97.8 92 54.3
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 7.0e-12 75.1 146 37.7
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.6e-11 73.9 183 33.9
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 7.8e-11 71.6 178 33.7
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.3e-10 70.9 180 33.3
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.7e-10 70.5 169 33.1
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 2.3e-10 70.1 172 33.7
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 1.1e-09 67.8 83 43.4
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 1.1e-09 67.8 71 46.5
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 1.1e-09 67.8 71 46.5
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 3.3e-09 66.2 150 31.3
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 7.3e-09 65.1 169 32.0
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.2e-08 64.3 169 32.0
Cre06.g305500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.6e-08 63.9 144 31.9
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.6e-08 63.9 169 32.0
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.1e-08 63.5 76 44.7
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 2.8e-08 63.2 174 32.8
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 2.8e-08 63.2 169 31.4
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 2.8e-08 63.2 169 30.2
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 2.8e-08 63.2 174 31.0
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.7e-08 62.4 170 31.2
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 6.2e-08 62.0 174 31.0
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 6.2e-08 62.0 185 30.3
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 8.1e-08 61.6 169 30.2
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 1.1e-07 61.2 161 31.7
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.1e-07 61.2 184 28.8
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.1e-07 61.2 147 32.0
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.1e-07 61.2 187 31.0
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.8e-07 60.5 119 32.8
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.3e-07 60.1 168 31.5
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.3e-07 60.1 169 30.8
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 3.1e-07 59.7 169 30.2
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 3.1e-07 59.7 169 30.2
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 3.1e-07 59.7 168 31.5
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 3.1e-07 59.7 172 31.4
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 3.1e-07 59.7 199 29.6
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.1e-07 59.7 199 31.2
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.0e-07 59.3 162 28.4
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 4.0e-07 59.3 170 31.8
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 5.2e-07 58.9 172 29.7
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 5.2e-07 58.9 161 32.3
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 6.8e-07 58.5 167 25.7
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 6.8e-07 58.5 169 29.6
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 6.8e-07 58.5 174 30.5
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 6.8e-07 58.5 169 29.0
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 8.9e-07 58.2 163 30.1
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.2e-06 57.8 179 27.9
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 2.0e-06 57.0 172 29.7
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 2.6e-06 56.6 170 30.0
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.4e-06 56.2 119 30.3
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 4.4e-06 55.8 161 30.4
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.8e-06 55.5 169 30.2
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 5.8e-06 55.5 169 30.2
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 5.8e-06 55.5 169 30.8
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 5.8e-06 55.5 171 29.2
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 9.9e-06 54.7 146 29.5
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 9.9e-06 54.7 143 30.8
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 9.9e-06 54.7 153 32.0
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 9.9e-06 54.7 175 27.4
PRCOL_00006077 Prasinoderma coloniale HOM05D006499 ORTHO05D007874 9.9e-06 54.7 184 30.4


User provided reference genes

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