Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0519900 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D007210 1.2e-123 446.4 218 100.0
Zm00001eb378830 Zea mays HOM05D002510 ORTHO05D007210 9.5e-84 313.9 218 70.6
Cpa.g.sc53.84 Carica papaya HOM05D002510 ORTHO05D007210 2.8e-67 259.2 215 57.7
Rhsim09G0151500 Rhododendron simsii HOM05D002510 ORTHO05D007210 1.8e-66 256.5 213 56.8
Nn2g10809 Nelumbo nucifera HOM05D002510 ORTHO05D007210 5.3e-66 255.0 215 56.7
vmacro04870 Vaccinium macrocarpon HOM05D002510 ORTHO05D007210 1.2e-65 253.8 213 56.3
GSVIVG01016269001 Vitis vinifera HOM05D002510 ORTHO05D007210 5.8e-65 251.5 211 58.8
CSS0007795 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D007210 7.6e-65 251.1 218 57.8
Lj1C913G7 Lonicera japonica HOM05D002510 ORTHO05D007210 1.3e-64 250.4 214 58.4
COL.COLO4_23653 Corchorus olitorius HOM05D002510 ORTHO05D007210 2.2e-64 249.6 213 56.3
CsaV3_5G036260 Cucumis sativus L. HOM05D002510 ORTHO05D007210 2.9e-64 249.2 216 58.3
Sed0025740 Sechium edule HOM05D002510 ORTHO05D007210 2.9e-64 249.2 216 58.3
Potri.008G039400 Populus trichocarpa HOM05D002510 ORTHO05D007210 4.9e-64 248.4 216 56.0
Dinv36438 Davidia involucrata HOM05D002510 ORTHO05D007210 8.4e-64 247.7 215 57.2
Atru.chr12.757 Acer truncatum HOM05D002510 ORTHO05D007210 1.4e-63 246.9 219 55.3
PGR142G3054 Punica granatum HOM05D002510 ORTHO05D007210 1.4e-63 246.9 218 54.6
PSO339G3140 Papaver somniferum HOM05D002510 ORTHO05D007210 1.9e-63 246.5 217 56.2
TWI15G1196 Tripterygium wilfordii HOM05D002510 ORTHO05D007210 4.2e-63 245.4 217 54.8
MELO3C012427.2 Cucumis melo HOM05D002510 ORTHO05D007210 5.4e-63 245.0 216 57.4
Cfa001648 Carpinus fangiana HOM05D002510 ORTHO05D007210 7.1e-63 244.6 216 55.6
ClCG05G021040 Citrullus lanatus HOM05D002510 ORTHO05D007210 9.3e-63 244.2 216 56.9
Sc09g0006280 Simmondsia chinensis HOM05D002510 ORTHO05D007210 9.3e-63 244.2 214 56.1
Ciclev10030651m.g Citrus clementina HOM05D002510 ORTHO05D007210 1.6e-62 243.4 223 53.8
CiPaw.01G272500 Carya illinoinensis HOM05D002510 ORTHO05D007210 2.1e-62 243.0 216 56.0
Lsat_1_v5_gn_8_20140 Lactuca sativa HOM05D002510 ORTHO05D007210 2.1e-62 243.0 212 55.2
Manes.10G046400 Manihot esculenta HOM05D002510 ORTHO05D007210 2.7e-62 242.7 220 54.5
Manes.10G046500 Manihot esculenta HOM05D002510 ORTHO05D007210 2.7e-62 242.7 210 58.1
Atru.chr12.781 Acer truncatum HOM05D002510 ORTHO05D007210 3.5e-62 242.3 219 54.3
PSO384G1458 Papaver somniferum HOM05D002510 ORTHO05D007210 3.5e-62 242.3 211 56.4
MD07G1174500 Malus domestica HOM05D002510 ORTHO05D007210 1.0e-61 240.7 217 53.9
DCAR_015299 Daucus carota HOM05D002510 ORTHO05D007210 2.3e-61 239.6 216 54.2
Gohir.A13G021900 Gossypium hirsutum HOM05D002510 ORTHO05D007210 2.3e-61 239.6 214 55.1
Gohir.D13G022500 Gossypium hirsutum HOM05D002510 ORTHO05D007210 3.0e-61 239.2 214 55.1
Gorai.013G025200 Gossypium raimondii HOM05D002510 ORTHO05D007210 3.0e-61 239.2 214 55.1
TAR633G1832 Trochodendron aralioides HOM05D002510 ORTHO05D007210 3.9e-61 238.8 214 55.1
Ah.08g213550 Amaranthus hybridus HOM05D002510 ORTHO05D007210 5.1e-61 238.4 211 54.0
AUR62033005 Chenopodium quinoa HOM05D002510 ORTHO05D007210 5.1e-61 238.4 215 54.4
Aqoxy2G01930 Aquilegia oxysepala HOM05D002510 ORTHO05D007210 6.7e-61 238.0 220 53.2
Prupe.2G213300 Prunus persica HOM05D002510 ORTHO05D007210 2.5e-60 236.1 216 55.1
RcHm_v2.0_Chr1g0363331 Rosa chinensis HOM05D002510 ORTHO05D007210 2.5e-60 236.1 215 55.3
EL10Ac3g06545 Beta vulgaris HOM05D002510 ORTHO05D007210 4.3e-60 235.3 209 55.0
Duzib128G1669 Durio zibethinus HOM05D002510 ORTHO05D007210 5.6e-60 235.0 214 53.7
Psat6g183520 Pisum sativum HOM05D002510 ORTHO05D007210 9.6e-60 234.2 214 53.7
Thecc.10G074100 Theobroma cacao HOM05D002510 ORTHO05D007210 9.6e-60 234.2 212 53.8
AUR62038657 Chenopodium quinoa HOM05D002510 ORTHO05D007210 2.1e-59 233.0 215 53.0
QL08p055755 Quercus lobata HOM05D002510 ORTHO05D007210 2.1e-59 233.0 219 54.8
Peaxi162Scf01719g00012 Petunia axillaris HOM05D002510 ORTHO05D007210 3.6e-59 232.3 217 52.5
Eucgr.G02835 Eucalyptus grandis HOM05D002510 ORTHO05D007210 1.1e-58 230.7 217 52.5
HanXRQChr08g0218901 Helianthus annuus HOM05D002510 ORTHO05D007210 1.8e-58 229.9 221 52.9
Medtr1g095040 Medicago truncatula HOM05D002510 ORTHO05D007210 4.0e-58 228.8 214 53.3
SGA_v2.0_scaffold51G18685 Striga asiatica HOM05D002510 ORTHO05D007210 4.0e-58 228.8 217 50.2
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 5.3e-58 228.4 211 54.5
TPR.G1937 Trifolium pratense HOM05D002510 ORTHO05D007210 5.3e-58 228.4 212 55.2
FvH4_7g19460 Fragaria vesca HOM05D002510 ORTHO05D007210 6.9e-58 228.0 215 54.4
Migut.F01756 Erythranthe guttata HOM05D002510 ORTHO05D007210 1.5e-57 226.9 217 51.6
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.5e-57 226.9 211 53.6
Glyma.10G210900 Glycine max HOM05D002510 ORTHO05D007210 1.5e-57 226.9 214 54.2
ATR0048G055 Amborella trichopoda HOM05D002510 ORTHO05D007210 2.6e-57 226.1 195 56.4
SalBow3G0762 Salvia bowleyana HOM05D002510 ORTHO05D007210 3.4e-57 225.7 219 51.6
Solyc04g025260.3 Solanum lycopersicum HOM05D002510 ORTHO05D007210 4.5e-57 225.3 221 51.6
FAN03G2366 Fragaria x ananassa HOM05D002510 ORTHO05D007210 5.8e-57 224.9 223 51.1
Sopen04g011710 Solanum pennellii HOM05D002510 ORTHO05D007210 5.8e-57 224.9 221 51.6
MSTRG.8144 Avicennia marina HOM05D002510 ORTHO05D007210 1.3e-56 223.8 214 51.9
ECA233G4317 Erigeron canadensis HOM05D002510 ORTHO05D007210 1.7e-56 223.4 217 52.5
Lj5g0022157 Lotus japonicus HOM05D002510 ORTHO05D007210 1.7e-56 223.4 214 53.3
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 6.4e-56 221.5 207 54.1
arahy.Tifrunner.gnm1.ann1.T8Z27G Arachis hypogaea HOM05D002510 ORTHO05D007210 1.4e-55 220.3 214 51.4
Oeu014387.1 Olea europaea HOM05D002510 ORTHO05D007210 1.9e-55 219.9 218 51.8
Ciclev10030885m.g Citrus clementina HOM05D002510 ORTHO05D007210 2.4e-55 219.5 220 50.5
Nitab4.5_0000534g0010 Nicotiana tabacum HOM05D002510 ORTHO05D007210 3.2e-55 219.2 218 50.9
Nitab4.5_0001053g0040 Nicotiana tabacum HOM05D002510 ORTHO05D007210 4.2e-55 218.8 218 50.9
arahy.Tifrunner.gnm1.ann1.UF4UZA Arachis hypogaea HOM05D002510 ORTHO05D007210 2.7e-54 216.1 214 50.9
CAN.G656.24 Capsicum annuum HOM05D002510 ORTHO05D007210 3.5e-54 215.7 213 49.8
Phvul.007G094700 Phaseolus vulgaris HOM05D002510 ORTHO05D007210 6.0e-54 214.9 214 51.4
VMungo0720G2840 Vigna mungo HOM05D002510 ORTHO05D007210 1.0e-53 214.2 209 50.7
Lalb_Chr21g0306101 Lupinus albus HOM05D002510 ORTHO05D007210 1.3e-53 213.8 215 51.2
Cc02_g11330 Coffea canephora HOM05D002510 ORTHO05D007210 3.0e-53 212.6 217 48.8
SHI21366 Sapria himalayana HOM05D002510 ORTHO05D007210 6.7e-53 211.5 213 52.6
unitig_26.g9079 Utricularia gibba HOM05D002510 ORTHO05D007210 1.1e-52 210.7 212 50.5
HPP92_028503 Vanilla planifolia HOM05D002510 ORTHO05D007210 5.6e-52 208.4 213 49.8
THA.LOC104827301 Tarenaya hassleriana HOM05D002510 ORTHO05D007210 5.3e-50 201.8 213 46.9
Carub.0006s1900 Capsella rubella HOM05D002510 ORTHO05D007210 5.5e-47 191.8 209 46.9
Sp7g14310 Schrenkiella parvula HOM05D002510 ORTHO05D007210 4.6e-46 188.7 213 45.5
CARHR290280 Cardamine hirsuta HOM05D002510 ORTHO05D007210 6.0e-46 188.3 213 45.5
AT5G20660 Arabidopsis thaliana HOM05D002510 ORTHO05D007210 1.0e-45 187.6 211 46.9
Thhalv10024352m.g Eutrema salsugineum HOM05D002510 ORTHO05D007210 3.0e-45 186.0 218 44.0
BolC1t02655H Brassica oleracea HOM05D002510 ORTHO05D007210 3.9e-45 185.7 223 44.8
AL6G32210 Arabidopsis lyrata HOM05D002510 ORTHO05D007210 5.1e-45 185.3 211 45.0
C01p27080 Brassica napus HOM05D002510 ORTHO05D007210 1.9e-44 183.3 223 44.4
A01p21720 Brassica napus HOM05D002510 ORTHO05D007210 4.3e-44 182.2 223 44.4
BraA01t02081Z Brassica rapa HOM05D002510 ORTHO05D007210 4.3e-44 182.2 223 44.4
Aa31LG1G20400 Aethionema arabicum HOM05D002510 ORTHO05D007210 4.8e-43 178.7 213 43.7
HPP92_008619 Vanilla planifolia HOM05D002510 ORTHO05D007210 2.9e-40 169.5 146 53.4
SGA_v2.0_scaffold341G49348 Striga asiatica HOM05D002510 ORTHO05D007210 6.1e-38 161.8 198 42.4
Lalb_Chr06g0162341 Lupinus albus HOM05D002510 ORTHO05D007210 3.7e-35 152.5 213 41.3
Sp7g14150 Schrenkiella parvula HOM05D002510 ORTHO05D007210 2.6e-33 146.4 196 40.8
Mapoly0061s0015 Marchantia polymorpha HOM05D002510 ORTHO05D007210 5.9e-33 145.2 213 39.9
SMO364G0963 Selaginella moellendorffii HOM05D002510 ORTHO05D007210 1.9e-31 140.2 217 38.7
Pp3c9_12500 Physcomitrium patens HOM05D002510 ORTHO05D007210 1.5e-28 130.6 219 34.7
Thecc.10G074300 Theobroma cacao HOM05D002510 ORTHO05D007210 1.5e-25 120.6 105 53.3
Haze_16888 Corylus avellana HOM05D002510 ORTHO05D007210 3.8e-24 115.9 106 52.8
Hund12052 Selenicereus undatus HOM05D002510 ORTHO05D007210 3.8e-24 115.9 101 54.5
SEGI_02124 Sequoiadendron giganteum HOM05D002510 ORTHO05D015872 4.7e-22 109.0 109 45.0
BcaNung00246 Brassica carinata HOM05D002510 ORTHO05D007210 3.1e-18 96.3 206 34.0


User provided reference genes

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