Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 2336.6 1188 100.0
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 2058.5 1203 87.3
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1561.6 1215 65.8
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1558.5 1210 66.4
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1556.2 1215 65.9
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1550.0 1217 65.5
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1545.0 1213 66.0
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1544.3 1209 65.2
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1540.8 1211 64.6
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1540.8 1198 66.1
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1538.1 1299 62.4
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1538.1 1299 62.4
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1536.9 1214 65.0
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1533.5 1217 65.0
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1532.7 1217 65.0
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1528.1 1213 64.9
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1526.5 1211 64.7
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1523.5 1214 65.2
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1522.7 1214 65.1
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1520.4 1210 64.6
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1519.6 1212 64.3
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1519.6 1210 64.4
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1515.7 1210 64.4
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1515.7 1209 64.3
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1513.8 1210 63.8
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1513.4 1217 63.9
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1513.4 1212 64.8
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1512.7 1214 64.4
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1511.1 1212 64.7
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1509.2 1226 63.5
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1508.8 1211 63.7
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1507.7 1209 64.1
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1507.3 1213 64.3
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1506.5 1213 64.1
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1505.0 1226 63.5
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1501.5 1211 64.3
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1500.7 1212 64.0
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1499.2 1208 63.9
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1498.8 1209 63.6
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1498.4 1205 63.3
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1496.5 1213 63.6
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1495.7 1211 63.7
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1494.6 1210 63.7
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1494.6 1306 60.0
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1493.0 1210 63.6
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1492.6 1206 64.1
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1492.2 1206 63.2
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1491.9 1210 63.8
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1491.9 1211 63.7
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1491.1 1209 63.4
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1490.7 1217 63.4
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1490.7 1212 63.9
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1489.9 1207 63.8
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1489.2 1206 64.3
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1489.2 1211 64.1
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1488.4 1206 63.5
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1488.0 1209 63.4
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1488.0 1206 63.5
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1487.6 1213 63.5
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1486.1 1206 63.7
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1485.3 1226 62.6
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1482.6 1210 63.2
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1481.1 1209 63.2
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1478.4 1227 63.0
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1478.0 1297 60.6
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1477.2 1210 63.1
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1476.8 1212 62.9
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1476.8 1209 62.4
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1473.4 1214 62.8
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1469.5 1207 63.0
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1468.0 1207 63.2
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1466.1 1214 62.2
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1465.7 1211 62.3
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1464.1 1206 63.6
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1456.4 1211 62.4
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1456.0 1208 61.8
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1455.3 1206 63.0
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1442.6 1353 57.6
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1441.8 1240 61.3
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1432.9 1141 65.4
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1426.4 1200 61.6
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1408.7 1210 61.2
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1405.2 1206 60.6
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1401.3 1212 60.1
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1396.3 1106 65.6
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1389.8 1211 60.4
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1372.5 1208 59.9
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1338.9 1210 56.9
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1335.1 1203 58.2
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1304.3 1044 65.1
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1293.1 1051 64.0
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1291.6 1051 63.8
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1271.9 1013 64.7
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1243.0 1028 62.5
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1238.4 984 64.8
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1236.1 1218 54.9
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1233.4 1004 63.6
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1230.3 988 64.4
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1187.2 1061 58.2
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1155.6 1233 51.6
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1132.1 908 65.0
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1125.5 938 61.7
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1116.7 897 65.1
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1108.2 827 67.6
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 4.1e-306 1055.0 866 61.9
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 4.7e-302 1041.6 1209 49.3
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 4.9e-299 1031.6 1208 48.8
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 3.0e-264 916.0 1340 43.1
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.1e-261 907.5 1192 43.4
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.2e-233 814.3 1234 40.9
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.5e-218 764.2 1137 41.1
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.5e-199 701.0 522 68.8
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 8.9e-168 595.5 425 70.6
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.7e-145 520.4 756 43.5
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.7e-123 446.4 324 67.3
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.2e-119 435.6 482 51.2
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 6.1e-116 423.3 307 66.8
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 3.9e-115 420.6 438 53.2
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 3.9e-115 420.6 325 64.3
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 5.5e-101 373.6 359 57.7
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 2.1e-100 371.7 329 59.6
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 1.7e-97 362.1 276 69.2
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 8.5e-94 349.7 298 59.4
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 9.4e-93 346.3 257 71.2
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 4.0e-91 340.9 360 51.7
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 2.2e-89 335.1 324 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 6.8e-83 313.5 306 52.3
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 1.6e-63 249.2 398 41.0
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.6e-60 239.2 150 87.3
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.1e-48 199.9 172 61.6
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.2e-40 171.8 270 40.0
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.1e-39 169.1 173 53.8
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.5e-39 168.3 142 52.8
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 6.7e-38 164.1 188 49.5
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.5e-37 162.9 117 65.0
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 4.3e-37 161.4 151 60.9
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 8.1e-36 157.1 728 25.0
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 5.3e-35 154.5 119 61.3
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 4.6e-31 141.4 84 84.5
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 4.6e-23 114.8 168 40.5
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 3.9e-22 111.7 171 40.9
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.9e-16 92.8 78 53.8
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 4.6e-15 88.2 59 69.5
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.0e-14 85.5 230 31.7
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 5.3e-11 74.7 47 68.1
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 3.4e-10 72.0 76 55.3
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 1.3e-09 70.1 70 60.0
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 1.3e-09 70.1 70 60.0
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 3.8e-09 68.6 63 54.0
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.2e-07 63.5 39 71.8
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 8.8e-06 57.4 93 37.6


User provided reference genes

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