Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0498000 Oryza sativa ssp. japonica HOM05D005858 ORTHO05D006982 4.9e-47 191.0 115 100.0
Zm00001eb078470 Zea mays HOM05D005858 ORTHO05D006982 1.9e-19 99.4 59 86.4
Dinv41306 Davidia involucrata HOM05D005858 ORTHO05D006982 8.2e-18 94.0 107 53.3
Peaxi162Scf00525g00820 Petunia axillaris HOM05D005858 ORTHO05D006982 4.1e-17 91.7 112 50.9
Gorai.012G096000 Gossypium raimondii HOM05D005858 ORTHO05D006982 5.3e-17 91.3 71 69.0
Gohir.A05G345842 Gossypium hirsutum HOM05D005858 ORTHO05D006982 6.9e-17 90.9 105 52.4
Dinv42786 Davidia involucrata HOM05D005858 ORTHO05D006982 1.5e-16 89.7 105 58.1
Dinv43315 Davidia involucrata HOM05D005858 ORTHO05D006982 1.5e-16 89.7 105 58.1
Zm00001eb425800 Zea mays HOM05D005858 ORTHO05D006982 1.5e-16 89.7 51 86.3
CAN.G1870.1 Capsicum annuum HOM05D005858 ORTHO05D006982 2.0e-16 89.4 107 51.4
PGSC0003DMG400011172 Solanum tuberosum HOM05D005858 ORTHO05D006982 2.0e-16 89.4 107 51.4
Thecc.09G160700 Theobroma cacao HOM05D005858 ORTHO05D006982 2.6e-16 89.0 112 50.0
Duzib187G2004 Durio zibethinus HOM05D005858 ORTHO05D006982 3.4e-16 88.6 105 52.4
Solyc07g006320.4 Solanum lycopersicum HOM05D005858 ORTHO05D006982 5.9e-16 87.8 107 50.5
TAR383G0158 Trochodendron aralioides HOM05D005858 ORTHO05D006982 5.9e-16 87.8 82 64.6
Gohir.D04G086000 Gossypium hirsutum HOM05D005858 ORTHO05D006982 1.0e-15 87.0 105 51.4
Sc08g0005620 Simmondsia chinensis HOM05D005858 ORTHO05D006982 1.3e-15 86.7 71 66.2
FvH4_4g09670 Fragaria vesca HOM05D005858 ORTHO05D006982 1.7e-15 86.3 104 59.6
FAN12G2717 Fragaria x ananassa HOM05D005858 ORTHO05D006982 1.7e-15 86.3 104 59.6
FAN12G2910 Fragaria x ananassa HOM05D005858 ORTHO05D006982 1.7e-15 86.3 104 60.6
CiPaw.08G040300 Carya illinoinensis HOM05D005858 ORTHO05D006982 2.2e-15 85.9 105 50.5
COL.COLO4_04533 Corchorus olitorius HOM05D005858 ORTHO05D006982 2.2e-15 85.9 71 66.2
Duzib168G1554 Durio zibethinus HOM05D005858 ORTHO05D006982 2.2e-15 85.9 104 51.0
Oeu035673.1 Olea europaea HOM05D005858 ORTHO05D006982 2.2e-15 85.9 105 50.5
RcHm_v2.0_Chr4g0404961 Rosa chinensis HOM05D005858 ORTHO05D006982 2.2e-15 85.9 104 51.9
Ciclev10008554m.g Citrus clementina HOM05D005858 ORTHO05D006982 5.0e-15 84.7 81 60.5
FAN07G0488 Fragaria x ananassa HOM05D005858 ORTHO05D006982 5.0e-15 84.7 104 56.7
Atru.chr7.494 Acer truncatum HOM05D005858 ORTHO05D006982 6.5e-15 84.3 70 67.1
FAN22G1041 Fragaria x ananassa HOM05D005858 ORTHO05D006982 6.5e-15 84.3 71 64.8
QL02p095637 Quercus lobata HOM05D005858 ORTHO05D006982 6.5e-15 84.3 72 66.7
Actinidia20954 Actinidia chinensis HOM05D005858 ORTHO05D006982 1.4e-14 83.2 105 49.5
Gorai.004G103900 Gossypium raimondii HOM05D005858 ORTHO05D006982 1.9e-14 82.8 105 47.6
Migut.J01417 Erythranthe guttata HOM05D005858 ORTHO05D006982 3.2e-14 82.0 103 50.5
FAN17G1719 Fragaria x ananassa HOM05D005858 ORTHO05D006982 3.2e-14 82.0 104 50.0
Gohir.A08G096524 Gossypium hirsutum HOM05D005858 ORTHO05D006982 3.2e-14 82.0 105 48.6
Potri.018G099000 Populus trichocarpa HOM05D005858 ORTHO05D006982 3.2e-14 82.0 82 62.2
PSO782G0888 Papaver somniferum HOM05D005858 ORTHO05D006982 5.5e-14 81.3 112 47.3
Sabra18G0085500 Salix brachista HOM05D005858 ORTHO05D006982 7.2e-14 80.9 110 49.1
Hma1.2p1_1531F.1_g289239 Hydrangea macrophylla HOM05D005858 ORTHO05D006982 9.4e-14 80.5 105 47.6
MELO3C010169.2 Cucumis melo HOM05D005858 ORTHO05D006982 1.2e-13 80.1 72 59.7
Manes.06G025900 Manihot esculenta HOM05D005858 ORTHO05D006982 1.6e-13 79.7 107 57.0
Haze_22170 Corylus avellana HOM05D005858 ORTHO05D006982 2.1e-13 79.3 71 63.4
MBI14_g08081_MAGBIO Magnolia biondii HOM05D005858 ORTHO05D006982 2.1e-13 79.3 87 56.3
Nitab4.5_0005551g0040 Nicotiana tabacum HOM05D005858 ORTHO05D006982 2.1e-13 79.3 107 51.4
Nitab4.5_0005985g0060 Nicotiana tabacum HOM05D005858 ORTHO05D006982 2.1e-13 79.3 107 49.5
Hund26407 Selenicereus undatus HOM05D005858 ORTHO05D006982 2.1e-13 79.3 71 66.2
VMungo1215G2346 Vigna mungo HOM05D005858 ORTHO05D006982 2.1e-13 79.3 105 46.7
Ca_21182_v3 Cicer arietinum L. HOM05D005858 ORTHO05D006982 2.7e-13 79.0 72 61.1
Ah.09g229510 Amaranthus hybridus HOM05D005858 ORTHO05D006982 4.6e-13 78.2 72 62.5
Cc06_g14020 Coffea canephora HOM05D005858 ORTHO05D006982 4.6e-13 78.2 109 47.7
Aqoxy7G03242 Aquilegia oxysepala HOM05D005858 ORTHO05D006982 6.1e-13 77.8 63 65.1
EL10Ac8g18869 Beta vulgaris HOM05D005858 ORTHO05D006982 1.0e-12 77.0 71 62.0
AUR62039752 Chenopodium quinoa HOM05D005858 ORTHO05D006982 1.4e-12 76.6 70 62.9
PGR142G1620 Punica granatum HOM05D005858 ORTHO05D006982 1.4e-12 76.6 106 49.1
TWI32G1032 Tripterygium wilfordii HOM05D005858 ORTHO05D006982 1.8e-12 76.3 75 56.0
Cpa.g.sc75.19 Carica papaya HOM05D005858 ORTHO05D006982 6.7e-12 74.3 60 65.0
GSVIVG01023744001 Vitis vinifera HOM05D005858 ORTHO05D006982 8.8e-12 73.9 106 56.6
MD13G1260700 Malus domestica HOM05D005858 ORTHO05D006982 1.1e-11 73.6 62 59.7
Cfa013549 Carpinus fangiana HOM05D005858 ORTHO05D006982 1.5e-11 73.2 62 61.3
Hund08985 Selenicereus undatus HOM05D005858 ORTHO05D006982 3.3e-11 72.0 71 60.6
Lalb_Chr07g0180081 Lupinus albus HOM05D005858 ORTHO05D006982 4.3e-11 71.6 72 58.3
Rhsim01G0012300 Rhododendron simsii HOM05D005858 ORTHO05D006982 4.3e-11 71.6 60 60.0
ECA234G1989 Erigeron canadensis HOM05D005858 ORTHO05D006982 5.7e-11 71.2 108 52.8
Prupe.1G097500 Prunus persica HOM05D005858 ORTHO05D006982 7.4e-11 70.9 62 56.5
CANSAT11G0936 Cannabis sativa HOM05D005858 ORTHO05D006982 9.7e-11 70.5 61 63.9
Eucgr.C00211 Eucalyptus grandis HOM05D005858 ORTHO05D006982 9.7e-11 70.5 71 57.7
Lalb_Chr18g0049831 Lupinus albus HOM05D005858 ORTHO05D006982 9.7e-11 70.5 81 54.3
Psat0s235g0040 Pisum sativum HOM05D005858 ORTHO05D006982 9.7e-11 70.5 61 60.7
Sopen07g002410 Solanum pennellii HOM05D005858 ORTHO05D006982 9.7e-11 70.5 107 42.1
Nn8g40237 Nelumbo nucifera HOM05D005858 ORTHO05D006982 1.3e-10 70.1 62 59.7
Sp6g19450 Schrenkiella parvula HOM05D005858 ORTHO05D006982 2.2e-10 69.3 111 47.7
Lj4g0010700 Lotus japonicus HOM05D005858 ORTHO05D006982 2.8e-10 68.9 72 52.8
Ah.14g084110 Amaranthus hybridus HOM05D005858 ORTHO05D006982 3.7e-10 68.6 62 62.9
SalBow6G6404 Salvia bowleyana HOM05D005858 ORTHO05D006982 4.8e-10 68.2 103 40.8
C09p49650 Brassica napus HOM05D005858 ORTHO05D006982 6.3e-10 67.8 111 46.8
Phvul.003G151200 Phaseolus vulgaris HOM05D005858 ORTHO05D006982 6.3e-10 67.8 72 52.8
Nn2g12544 Nelumbo nucifera HOM05D005858 ORTHO05D006982 8.2e-10 67.4 60 60.0
ClCG06G012900 Citrullus lanatus HOM05D005858 ORTHO05D006982 1.1e-09 67.0 59 55.9
Lj9A728G21 Lonicera japonica HOM05D005858 ORTHO05D006982 1.1e-09 67.0 133 39.8
Sed0010370 Sechium edule HOM05D005858 ORTHO05D006982 1.1e-09 67.0 62 56.5
Glyma.17G068700 Glycine max HOM05D005858 ORTHO05D006982 1.4e-09 66.6 60 55.0
HanXRQChr10g0306461 Helianthus annuus HOM05D005858 ORTHO05D006982 1.4e-09 66.6 67 58.2
GSVIVG01023724001 Vitis vinifera HOM05D005858 ORTHO05D006982 1.4e-09 66.6 60 60.0
CsaV3_1G029470 Cucumis sativus L. HOM05D005858 ORTHO05D006982 2.4e-09 65.9 59 54.2
Glyma.13G091600 Glycine max HOM05D005858 ORTHO05D006982 2.4e-09 65.9 59 55.9
Medtr4g129510 Medicago truncatula HOM05D005858 ORTHO05D006982 2.4e-09 65.9 60 56.7
SGA_v2.0_scaffold66G22516 Striga asiatica HOM05D005858 ORTHO05D006982 4.1e-09 65.1 61 62.3
TPR.G5337 Trifolium pratense HOM05D005858 ORTHO05D006982 4.1e-09 65.1 60 55.0
AUR62028410 Chenopodium quinoa HOM05D005858 ORTHO05D006982 6.9e-09 64.3 62 64.5
Lsat_1_v5_gn_5_87041 Lactuca sativa HOM05D005858 ORTHO05D006982 6.9e-09 64.3 61 57.4
Hund08986 Selenicereus undatus HOM05D005858 ORTHO05D006982 6.9e-09 64.3 71 54.9
Sed0010280 Sechium edule HOM05D005858 ORTHO05D006982 2.0e-08 62.8 58 51.7
SEGI_30551 Sequoiadendron giganteum HOM05D000814 ORTHO05D001161 2.0e-08 62.8 93 48.4
Ca_08199_v3 Cicer arietinum L. HOM05D005858 ORTHO05D006982 2.6e-08 62.4 53 66.0
Ca_28411_v3 Cicer arietinum L. HOM05D005858 ORTHO05D006982 2.6e-08 62.4 53 66.0
CSS0006326 Camellia sinensis var. sinensis HOM05D005858 ORTHO05D006982 4.5e-08 61.6 105 48.6
A02p08210 Brassica napus HOM05D005858 ORTHO05D006982 1.0e-07 60.5 63 61.9
BraA02t05894Z Brassica rapa HOM05D005858 ORTHO05D006982 1.0e-07 60.5 63 61.9
HanXRQChr12g0358041 Helianthus annuus HOM05D005858 ORTHO05D006982 1.0e-07 60.5 72 54.2
C02p13870 Brassica napus HOM05D005858 ORTHO05D006982 1.3e-07 60.1 64 59.4
BolC2t07506H Brassica oleracea HOM05D005858 ORTHO05D006982 1.3e-07 60.1 64 59.4
BcaB08g36140 Brassica carinata HOM05D005858 ORTHO05D006982 1.7e-07 59.7 72 55.6
BcaC04g19930 Brassica carinata HOM05D005858 ORTHO05D006982 1.7e-07 59.7 72 55.6
BolC9t57817H Brassica oleracea HOM05D005858 ORTHO05D006982 1.7e-07 59.7 72 55.6
Ca_02726_v3 Cicer arietinum L. HOM05D005858 ORTHO05D006982 2.9e-07 58.9 53 62.3
Ca_28181_v3 Cicer arietinum L. HOM05D005858 ORTHO05D006982 3.8e-07 58.5 53 62.3
AL8G33800 Arabidopsis lyrata HOM05D005858 ORTHO05D006982 5.0e-07 58.2 62 59.7
AT5G57770 Arabidopsis thaliana HOM05D005858 ORTHO05D006982 5.0e-07 58.2 62 59.7
A10p15140 Brassica napus HOM05D005858 ORTHO05D006982 5.0e-07 58.2 62 59.7
BraA10t43597Z Brassica rapa HOM05D005858 ORTHO05D006982 5.0e-07 58.2 62 59.7
Thhalv10013683m.g Eutrema salsugineum HOM05D005858 ORTHO05D006982 5.0e-07 58.2 62 59.7
arahy.Tifrunner.gnm1.ann1.67VYHR Arachis hypogaea HOM05D005858 ORTHO05D006982 1.1e-06 57.0 50 64.0
arahy.Tifrunner.gnm1.ann1.TG9B3Q Arachis hypogaea HOM05D005858 ORTHO05D006982 1.1e-06 57.0 50 64.0
BcaB08g36142 Brassica carinata HOM05D005858 ORTHO05D006982 1.1e-06 57.0 61 59.0
Carub.0008s1828 Capsella rubella HOM05D005858 ORTHO05D006982 1.1e-06 57.0 61 59.0
CARHR271500 Cardamine hirsuta HOM05D005858 ORTHO05D006982 1.4e-06 56.6 61 57.4
ATR0580G055 Amborella trichopoda HOM05D005858 ORTHO05D006982 4.2e-06 55.1 60 51.7
Aa31LG3G13600 Aethionema arabicum HOM05D005858 ORTHO05D006982 5.5e-06 54.7 61 57.4
DCAR_017943 Daucus carota HOM05D005858 ORTHO05D006982 7.2e-06 54.3 55 54.5
Lalb_Chr12g0199051 Lupinus albus HOM05D005858 ORTHO05D006982 9.4e-06 53.9 61 52.5


User provided reference genes

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