Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0497350 Oryza sativa ssp. japonica HOM05D007112 ORTHO05D008930 6.4e-119 430.6 199 100.0
Zm00001eb425740 Zea mays HOM05D007112 ORTHO05D008930 3.7e-74 282.0 215 64.7
CSS0005940 Camellia sinensis var. sinensis HOM05D007112 ORTHO05D008930 5.3e-49 198.4 196 51.5
HPP92_001291 Vanilla planifolia HOM05D007112 ORTHO05D008930 2.5e-46 189.5 215 45.6
FvH4_2g17490 Fragaria vesca HOM05D007112 ORTHO05D008930 3.2e-46 189.1 207 47.3
HanXRQChr08g0231791 Helianthus annuus HOM05D007112 ORTHO05D008930 4.2e-46 188.7 212 45.3
Actinidia23803 Actinidia chinensis HOM05D007112 ORTHO05D008930 9.4e-46 187.6 206 46.1
ATR0752G208 Amborella trichopoda HOM05D007112 ORTHO05D008930 1.2e-45 187.2 218 44.5
RcHm_v2.0_Chr6g0282211 Rosa chinensis HOM05D007112 ORTHO05D008930 2.1e-45 186.4 210 46.2
Rhsim01G0247600 Rhododendron simsii HOM05D007112 ORTHO05D008930 3.6e-45 185.7 216 46.3
Oeu013523.1 Olea europaea HOM05D007112 ORTHO05D008930 8.0e-45 184.5 216 46.8
FAN15G3611 Fragaria x ananassa HOM05D007112 ORTHO05D008930 1.0e-44 184.1 207 46.4
Lj2A1111T23 Lonicera japonica HOM05D007112 ORTHO05D008930 1.4e-44 183.7 225 44.9
VMungo0331G1777 Vigna mungo HOM05D007112 ORTHO05D008930 8.8e-44 181.0 217 43.8
Phvul.010G036300 Phaseolus vulgaris HOM05D007112 ORTHO05D008930 1.2e-43 180.6 217 42.4
TAR362G0557 Trochodendron aralioides HOM05D007112 ORTHO05D008930 1.5e-43 180.3 217 43.3
Hma1.2p1_1043F.1_g251280 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 2.0e-43 179.9 215 46.0
Aqoxy5G04050 Aquilegia oxysepala HOM05D007112 ORTHO05D008930 2.6e-43 179.5 222 44.1
arahy.Tifrunner.gnm1.ann1.T2R7SH Arachis hypogaea HOM05D007112 ORTHO05D008930 2.6e-43 179.5 219 42.9
Atru.chr6.3529 Acer truncatum HOM05D007112 ORTHO05D008930 3.3e-43 179.1 213 44.6
A05p40690 Brassica napus HOM05D007112 ORTHO05D008930 5.7e-43 178.3 213 43.2
Hund02806 Selenicereus undatus HOM05D007112 ORTHO05D008930 9.7e-43 177.6 216 41.7
Prupe.8G187100 Prunus persica HOM05D007112 ORTHO05D008930 1.3e-42 177.2 222 43.2
BcaC05g29544 Brassica carinata HOM05D007112 ORTHO05D008930 1.7e-42 176.8 214 42.1
Sc24g0003360 Simmondsia chinensis HOM05D007112 ORTHO05D008930 1.7e-42 176.8 191 45.0
Carub.0003s0707 Capsella rubella HOM05D007112 ORTHO05D008930 2.2e-42 176.4 222 43.2
Sp3g06430 Schrenkiella parvula HOM05D007112 ORTHO05D008930 2.2e-42 176.4 219 42.9
LjContig00389g0002281 Lotus japonicus HOM05D007112 ORTHO05D008930 2.8e-42 176.0 217 42.4
Cfa017735 Carpinus fangiana HOM05D007112 ORTHO05D008930 3.7e-42 175.6 216 44.0
AT3G07525 Arabidopsis thaliana HOM05D007112 ORTHO05D008930 4.8e-42 175.3 223 42.2
AUR62028645 Chenopodium quinoa HOM05D007112 ORTHO05D008930 6.3e-42 174.9 218 41.7
GSVIVG01001529001 Vitis vinifera HOM05D007112 ORTHO05D008930 6.3e-42 174.9 219 43.4
Dinv28792 Davidia involucrata HOM05D007112 ORTHO05D008930 8.2e-42 174.5 210 44.3
CARHR082180 Cardamine hirsuta HOM05D007112 ORTHO05D008930 1.1e-41 174.1 211 42.7
AUR62008068 Chenopodium quinoa HOM05D007112 ORTHO05D008930 1.1e-41 174.1 218 41.3
Duzib133G1446 Durio zibethinus HOM05D007112 ORTHO05D008930 1.4e-41 173.7 218 43.6
Ciclev10016325m.g Citrus clementina HOM05D007112 ORTHO05D008930 1.8e-41 173.3 218 43.1
Glyma.07G124300 Glycine max HOM05D007112 ORTHO05D008930 2.4e-41 172.9 216 42.1
Sed0011312 Sechium edule HOM05D007112 ORTHO05D008930 2.4e-41 172.9 219 41.6
BraA05t22800Z Brassica rapa HOM05D007112 ORTHO05D008930 3.1e-41 172.6 215 43.3
PSO675G4719 Papaver somniferum HOM05D007112 ORTHO05D008930 3.1e-41 172.6 244 40.2
C05p59800 Brassica napus HOM05D007112 ORTHO05D008930 5.3e-41 171.8 212 41.5
Lsat_1_v5_gn_9_16901 Lactuca sativa HOM05D007112 ORTHO05D008930 7.0e-41 171.4 212 42.9
TWI36G0064 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 7.0e-41 171.4 221 43.0
Lalb_Chr07g0194661 Lupinus albus HOM05D007112 ORTHO05D008930 9.1e-41 171.0 224 42.9
Glyma.03G097000 Glycine max HOM05D007112 ORTHO05D008930 1.2e-40 170.6 220 40.9
TPR.G17379 Trifolium pratense HOM05D007112 ORTHO05D008930 1.2e-40 170.6 215 44.2
vmacro14688 Vaccinium macrocarpon HOM05D007112 ORTHO05D008930 1.6e-40 170.2 219 43.8
BolC5t34634H Brassica oleracea HOM05D007112 ORTHO05D008930 4.5e-40 168.7 216 41.7
Nn7g37436 Nelumbo nucifera HOM05D007112 ORTHO05D008930 4.5e-40 168.7 123 61.8
Ca_23159_v3 Cicer arietinum L. HOM05D007112 ORTHO05D008930 5.9e-40 168.3 218 42.7
MD05G1153700 Malus domestica HOM05D007112 ORTHO05D008930 5.9e-40 168.3 214 41.1
Medtr8g010140 Medicago truncatula HOM05D007112 ORTHO05D008930 5.9e-40 168.3 215 41.9
PSO732G0401 Papaver somniferum HOM05D007112 ORTHO05D008930 5.9e-40 168.3 244 40.6
Psat4g208280 Pisum sativum HOM05D007112 ORTHO05D008930 7.7e-40 167.9 216 42.6
FAN24G0137 Fragaria x ananassa HOM05D007112 ORTHO05D008930 1.0e-39 167.5 213 45.5
THA.LOC104819012 Tarenaya hassleriana HOM05D007112 ORTHO05D008930 1.0e-39 167.5 217 41.0
Thhalv10022158m.g Eutrema salsugineum HOM05D007112 ORTHO05D008930 1.3e-39 167.2 217 41.0
ECA247G2139 Erigeron canadensis HOM05D000092 ORTHO05D008930 1.7e-39 166.8 212 41.5
unitig_60.g25572 Utricularia gibba HOM05D007112 ORTHO05D008930 2.2e-39 166.4 215 42.3
ClCG09G008370 Citrullus lanatus HOM05D007112 ORTHO05D008930 3.8e-39 165.6 220 42.7
arahy.Tifrunner.gnm1.ann1.X2Q8CL Arachis hypogaea HOM05D007112 ORTHO05D008930 6.5e-39 164.9 206 42.7
MSTRG.18505 Avicennia marina HOM05D007112 ORTHO05D008930 6.5e-39 164.9 219 41.6
COL.COLO4_34270 Corchorus olitorius HOM05D007112 ORTHO05D008930 8.5e-39 164.5 221 39.8
Thecc.01G207600 Theobroma cacao HOM05D007112 ORTHO05D008930 2.5e-38 162.9 219 39.3
Aa31LG5G18060 Aethionema arabicum HOM05D007112 ORTHO05D008930 7.2e-38 161.4 226 39.8
Nitab4.5_0010469g0020 Nicotiana tabacum HOM05D007112 ORTHO05D008930 9.4e-38 161.0 224 38.4
Gohir.A07G195600 Gossypium hirsutum HOM05D007112 ORTHO05D008930 1.6e-37 160.2 218 40.4
SalBow3G4154 Salvia bowleyana HOM05D007112 ORTHO05D008930 2.7e-37 159.5 217 40.1
CsaV3_7G026720 Cucumis sativus L. HOM05D007112 ORTHO05D008930 8.0e-37 157.9 219 39.3
Eucgr.K02360 Eucalyptus grandis HOM05D007112 ORTHO05D008930 8.0e-37 157.9 219 40.2
Gorai.001G227200 Gossypium raimondii HOM05D007112 ORTHO05D008930 1.8e-36 156.8 218 40.8
Nitab4.5_0000038g0350 Nicotiana tabacum HOM05D007112 ORTHO05D008930 1.8e-36 156.8 223 38.6
SHI30551 Sapria himalayana HOM05D007112 ORTHO05D008930 1.8e-36 156.8 194 40.7
Gohir.D07G202200 Gossypium hirsutum HOM05D007112 ORTHO05D008930 3.0e-36 156.0 220 40.9
Hma1.2p1_1043F.1_g251290 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 3.0e-36 156.0 124 58.9
Cc01_g15870 Coffea canephora HOM05D007112 ORTHO05D008930 4.0e-36 155.6 221 38.0
QL05p089159 Quercus lobata HOM05D007112 ORTHO05D008930 4.0e-36 155.6 222 39.6
Migut.D00774 Erythranthe guttata HOM05D007112 ORTHO05D008930 6.8e-36 154.8 218 38.1
CANSAT01G1474 Cannabis sativa HOM05D007112 ORTHO05D008930 1.5e-35 153.7 233 37.8
Sabra14G0134200 Salix brachista HOM05D007112 ORTHO05D008930 1.5e-35 153.7 226 38.9
PGSC0003DMG400021909 Solanum tuberosum HOM05D007112 ORTHO05D008930 1.3e-34 150.6 215 36.7
Peaxi162Scf02239g00022 Petunia axillaris HOM05D007112 ORTHO05D008930 1.1e-33 147.5 223 35.9
CDE05G1497 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 1.4e-33 147.1 123 51.2
Manes.13G056200 Manihot esculenta HOM05D007112 ORTHO05D008930 2.4e-33 146.4 125 53.6
Solyc09g047840.3 Solanum lycopersicum HOM05D007112 ORTHO05D008930 2.0e-32 143.3 215 35.8
CiPaw.14G038400 Carya illinoinensis HOM05D007112 ORTHO05D008930 7.7e-32 141.4 186 41.4
Sopen09g015950 Solanum pennellii HOM05D007112 ORTHO05D008930 7.7e-32 141.4 215 35.3
Ah.11g050810 Amaranthus hybridus HOM05D007112 ORTHO05D008930 1.7e-31 140.2 220 37.3
PGR044G1116 Punica granatum HOM05D007112 ORTHO05D008930 6.5e-31 138.3 218 37.2
MELO3C021125.2 Cucumis melo HOM05D007112 ORTHO05D008930 8.5e-31 137.9 120 51.7
Pp3c26_2050 Physcomitrium patens HOM05D007112 ORTHO05D008930 1.6e-29 133.7 191 39.3
MBI10_g35388_MAGBIO Magnolia biondii HOM05D007112 ORTHO05D008930 3.6e-29 132.5 257 37.7
HanXRQChr03g0082541 Helianthus annuus HOM05D007112 ORTHO05D008930 1.3e-26 124.0 88 61.4
Os12g0506800 Oryza sativa ssp. japonica HOM05D007112 ORTHO05D008930 3.1e-25 119.4 104 61.5
CAN.G50.11 Capsicum annuum HOM05D007112 ORTHO05D008930 2.0e-24 116.7 117 47.0
Mapoly0002s0314 Marchantia polymorpha HOM05D007112 ORTHO05D008930 1.9e-22 110.2 175 34.9
AagrBONN_evm.TU.Sc2ySwM_344.2017 Anthoceros agrestis HOM05D007112 ORTHO05D008930 1.2e-21 107.5 184 32.1
DCAR_018609 Daucus carota HOM05D007112 ORTHO05D008930 5.7e-19 98.6 158 34.8
SMO141G0021 Selaginella moellendorffii HOM05D007112 ORTHO05D008930 8.6e-15 84.7 103 38.8
EL10Ac5g10586 Beta vulgaris HOM05D007112 ORTHO05D008930 3.3e-14 82.8 79 44.3
Haze_03375 Corylus avellana HOM05D007112 ORTHO05D008930 1.1e-12 77.8 146 33.6
EL10Ac5g10588 Beta vulgaris HOM05D007112 ORTHO05D008930 1.2e-11 74.3 59 55.9
MD10G1148000 Malus domestica HOM05D007112 ORTHO05D008930 2.2e-10 70.1 119 31.9
CDE05G2169 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 2.4e-09 66.6 129 32.6
Cpa.g.sc8.40 Carica papaya HOM05D007112 ORTHO05D008930 1.6e-08 63.9 132 31.1


User provided reference genes

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