Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0495500 Oryza sativa ssp. japonica HOM05D000516 ORTHO05D000409 1.4e-70 269.6 148 100.0
Zm00001eb078620 Zea mays HOM05D000516 ORTHO05D000409 6.8e-33 144.4 127 71.7
HPP92_002741 Vanilla planifolia HOM05D000516 ORTHO05D000409 5.1e-12 75.1 114 48.2
Sed0026015 Sechium edule HOM05D000516 ORTHO05D000409 8.1e-10 67.8 116 40.5
TAR633G1959 Trochodendron aralioides HOM05D000516 ORTHO05D000409 1.4e-09 67.0 69 59.4
Peaxi162Scf00180g00131 Petunia axillaris HOM05D000516 ORTHO05D000409 8.9e-09 64.3 71 60.6
Nitab4.5_0001586g0120 Nicotiana tabacum HOM05D000516 ORTHO05D000409 1.2e-08 63.9 71 60.6
SEGI_20718 Sequoiadendron giganteum HOM05D000516 ORTHO05D000409 3.4e-08 62.4 70 60.0
CANSAT78G1650 Cannabis sativa HOM05D000516 ORTHO05D000409 7.6e-08 61.2 69 58.0
Duzib268G0214 Durio zibethinus HOM05D000516 ORTHO05D000409 7.6e-08 61.2 127 40.2
MD04G1043600 Malus domestica HOM05D000516 ORTHO05D000409 7.6e-08 61.2 72 52.8
MSTRG.9757 Avicennia marina HOM05D000516 ORTHO05D000409 9.9e-08 60.8 69 56.5
CsaV3_3G015850 Cucumis sativus L. HOM05D000516 ORTHO05D000409 1.3e-07 60.5 68 54.4
MD13G1271600 Malus domestica HOM05D000516 ORTHO05D000409 1.3e-07 60.5 72 52.8
Cc00_g03570 Coffea canephora HOM05D000516 ORTHO05D000409 1.7e-07 60.1 131 43.5
Dinv05075 Davidia involucrata HOM05D000516 ORTHO05D000409 1.7e-07 60.1 69 56.5
Nn1g09710 Nelumbo nucifera HOM05D000516 ORTHO05D000409 1.7e-07 60.1 69 55.1
SGA_v2.0_scaffold12G06168 Striga asiatica HOM05D000516 ORTHO05D000409 1.7e-07 60.1 118 48.3
CAN.G136.21 Capsicum annuum HOM05D000516 ORTHO05D000409 2.2e-07 59.7 71 57.7
MBI07_g42193_MAGBIO Magnolia biondii HOM05D000516 ORTHO05D000409 2.2e-07 59.7 71 53.5
unitig_0.g2400 Utricularia gibba HOM05D000516 ORTHO05D000409 2.2e-07 59.7 69 56.5
Duzib151G0443 Durio zibethinus HOM05D000516 ORTHO05D000409 2.9e-07 59.3 123 39.0
CSS0047133 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 3.8e-07 58.9 71 54.9
Nn7g37592 Nelumbo nucifera HOM05D000516 ORTHO05D000409 3.8e-07 58.9 70 54.3
Solyc06g053350.3 Solanum lycopersicum HOM05D000516 ORTHO05D000409 3.8e-07 58.9 71 56.3
Sopen06g018410 Solanum pennellii HOM05D000516 ORTHO05D000409 3.8e-07 58.9 71 56.3
Ah.07g202350 Amaranthus hybridus HOM05D000516 ORTHO05D000409 6.4e-07 58.2 103 46.6
BcaB06g28552 Brassica carinata HOM05D000516 ORTHO05D000409 6.4e-07 58.2 65 53.8
Cfa015191 Carpinus fangiana HOM05D000516 ORTHO05D000409 6.4e-07 58.2 71 54.9
Manes.11G123600 Manihot esculenta HOM05D000516 ORTHO05D000409 6.4e-07 58.2 69 55.1
Sed0025172 Sechium edule HOM05D000516 ORTHO05D000409 6.4e-07 58.2 68 50.0
SGA_v2.0_scaffold12G06169 Striga asiatica HOM05D000516 ORTHO05D000409 1.1e-06 57.4 70 54.3
MBI07_g18518_MAGBIO Magnolia biondii HOM05D000516 ORTHO05D000409 1.4e-06 57.0 110 45.5
RcHm_v2.0_Chr2g0157441 Rosa chinensis HOM05D000516 ORTHO05D000409 1.4e-06 57.0 74 51.4
FvH4_4g11161 Fragaria vesca HOM05D000516 ORTHO05D000409 1.9e-06 56.6 74 50.0
Glyma.11G126600 Glycine max HOM05D000516 ORTHO05D000409 1.9e-06 56.6 70 54.3
Prupe.1G197700 Prunus persica HOM05D000516 ORTHO05D000409 1.9e-06 56.6 70 51.4
A10p04690 Brassica napus HOM05D000516 ORTHO05D000409 2.4e-06 56.2 69 49.3
BraA10t42733Z Brassica rapa HOM05D000516 ORTHO05D000409 2.4e-06 56.2 69 49.3
Glyma.13G345200 Glycine max HOM05D000516 ORTHO05D000409 2.4e-06 56.2 70 55.7
QL10p050736 Quercus lobata HOM05D000516 ORTHO05D000409 2.4e-06 56.2 70 50.0
CDE09G0718 Ceratophyllum demersum HOM05D000516 ORTHO05D000409 3.2e-06 55.8 72 51.4
Thhalv10007692m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 3.2e-06 55.8 69 52.2
MD04G1043500 Malus domestica HOM05D000516 ORTHO05D000409 3.2e-06 55.8 69 50.7
Oeu034446.1 Olea europaea HOM05D000516 ORTHO05D000409 3.2e-06 55.8 71 52.1
Sp4g13850 Schrenkiella parvula HOM05D000516 ORTHO05D000409 3.2e-06 55.8 64 53.1
MELO3C006784.2 Cucumis melo HOM05D000516 ORTHO05D000409 4.2e-06 55.5 68 52.9
FAN07G1598 Fragaria x ananassa HOM05D000516 ORTHO05D000409 4.2e-06 55.5 78 51.3
Hund03174 Selenicereus undatus HOM05D000516 ORTHO05D000409 4.2e-06 55.5 68 50.0
THA.LOC104800891 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 4.2e-06 55.5 69 56.5
Aa31LG5G5580 Aethionema arabicum HOM05D000516 ORTHO05D000409 5.4e-06 55.1 69 52.2
MSTRG.24575 Avicennia marina HOM05D000516 ORTHO05D000409 5.4e-06 55.1 119 35.3
Sp1g04880 Schrenkiella parvula HOM05D000516 ORTHO05D000409 5.4e-06 55.1 69 52.2
Actinidia34585 Actinidia chinensis HOM05D000516 ORTHO05D000409 7.1e-06 54.7 70 48.6
ATR0743G138 Amborella trichopoda HOM05D000516 ORTHO05D000409 7.1e-06 54.7 66 53.0
arahy.Tifrunner.gnm1.ann1.H0KCEK Arachis hypogaea HOM05D000516 ORTHO05D000409 7.1e-06 54.7 73 53.4
Dinv44152 Davidia involucrata HOM05D000516 ORTHO05D000409 7.1e-06 54.7 71 50.7
Dinv44174 Davidia involucrata HOM05D000516 ORTHO05D000409 7.1e-06 54.7 71 50.7
Thhalv10016790m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 7.1e-06 54.7 67 50.7
Glyma.15G029100 Glycine max HOM05D000516 ORTHO05D000409 7.1e-06 54.7 70 54.3
THA.LOC104826197 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 7.1e-06 54.7 107 45.8
VMungo1080G0868 Vigna mungo HOM05D000516 ORTHO05D000409 7.1e-06 54.7 71 50.7
FAN22G1058 Fragaria x ananassa HOM05D000516 ORTHO05D000409 9.2e-06 54.3 74 50.0
Oeu064765.1 Olea europaea HOM05D000516 ORTHO05D000409 9.2e-06 54.3 72 51.4


User provided reference genes

Program Settings