Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 9.0e-79 297.0 163 100.0
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 1.5e-54 216.5 163 75.5
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.6e-35 153.3 161 54.0
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 6.3e-32 141.4 163 50.3
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 1.4e-31 140.2 167 47.3
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 4.1e-31 138.7 169 47.3
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 1.6e-30 136.7 163 47.9
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 1.6e-30 136.7 163 47.9
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 1.6e-30 136.7 172 47.7
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 2.0e-30 136.3 168 46.4
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 3.5e-30 135.6 167 46.7
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 3.5e-30 135.6 165 47.3
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 1.0e-29 134.0 164 47.6
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 1.3e-29 133.7 163 46.6
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 1.3e-29 133.7 163 46.6
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 1.3e-29 133.7 163 46.6
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 1.7e-29 133.3 172 45.3
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 2.9e-29 132.5 169 48.5
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 5.0e-29 131.7 169 47.9
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 8.6e-29 131.0 168 45.8
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 1.1e-28 130.6 163 46.6
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 1.1e-28 130.6 173 46.8
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 1.5e-28 130.2 167 44.3
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 1.5e-28 130.2 168 47.0
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 1.9e-28 129.8 162 46.3
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 2.5e-28 129.4 167 44.3
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 3.3e-28 129.0 167 46.7
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 4.2e-28 128.6 170 44.1
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 4.2e-28 128.6 169 45.6
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 7.2e-28 127.9 171 48.5
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 1.6e-27 126.7 164 46.3
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 1.6e-27 126.7 164 46.3
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.6e-27 126.7 124 54.8
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 2.1e-27 126.3 167 42.5
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 2.1e-27 126.3 171 45.0
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 2.1e-27 126.3 164 45.7
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 2.8e-27 125.9 170 42.9
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 3.6e-27 125.6 164 46.3
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 8.0e-27 124.4 168 42.9
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 1.0e-26 124.0 151 47.0
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 1.0e-26 124.0 156 44.2
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.4e-26 123.6 151 47.0
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.4e-26 123.6 170 42.9
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 1.4e-26 123.6 168 42.9
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 1.4e-26 123.6 172 45.3
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 1.4e-26 123.6 157 47.1
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 2.3e-26 122.9 166 45.8
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 2.3e-26 122.9 166 45.2
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 3.0e-26 122.5 167 41.9
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 3.0e-26 122.5 169 42.6
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 4.0e-26 122.1 166 43.4
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 4.0e-26 122.1 170 43.5
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 6.8e-26 121.3 169 42.6
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 8.9e-26 120.9 164 43.3
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 8.9e-26 120.9 173 43.4
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 1.2e-25 120.6 169 41.4
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 1.2e-25 120.6 173 43.4
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 1.2e-25 120.6 169 42.6
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 2.0e-25 119.8 162 45.1
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 3.4e-25 119.0 173 43.4
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 5.7e-25 118.2 164 42.7
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 5.7e-25 118.2 174 42.0
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 7.5e-25 117.9 166 44.0
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 7.5e-25 117.9 166 44.0
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 9.8e-25 117.5 170 42.4
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 1.3e-24 117.1 173 42.2
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 1.7e-24 116.7 164 42.7
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.8e-24 115.9 173 42.8
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 2.8e-24 115.9 168 40.5
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 3.7e-24 115.5 163 44.2
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 8.3e-24 114.4 167 40.7
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 1.1e-23 114.0 165 39.4
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 1.1e-23 114.0 169 40.2
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 1.4e-23 113.6 165 42.4
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 3.2e-23 112.5 180 38.9
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 3.2e-23 112.5 164 42.7
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 5.4e-23 111.7 138 47.1
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 5.4e-23 111.7 167 43.7
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 9.2e-23 110.9 161 45.3
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 1.2e-22 110.5 168 42.3
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 2.0e-22 109.8 172 42.4
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 4.5e-22 108.6 160 41.2
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 7.8e-22 107.8 166 38.6
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 7.8e-22 107.8 157 41.4
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 5.6e-20 101.7 166 36.7
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 1.2e-17 94.0 161 38.5
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 2.6e-17 92.8 166 37.3
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 4.4e-17 92.0 166 36.1
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 1.7e-16 90.1 142 39.4
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 1.1e-15 87.4 139 36.0
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 1.0e-13 80.9 120 42.5
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 1.3e-13 80.5 140 39.3
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 6.6e-13 78.2 165 35.8
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 1.9e-12 76.6 115 41.7
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 1.4e-10 70.5 168 33.3
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 2.6e-09 66.2 153 35.3
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 8.3e-08 61.2 126 34.9


User provided reference genes

Program Settings