Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0485700 Oryza sativa ssp. japonica HOM05D002802 ORTHO05D003166 1.6e-31 138.7 64 100.0
Os08g0236700 Oryza sativa ssp. japonica HOM05D002802 ORTHO05D003166 8.0e-31 136.3 64 98.4
Zm00001eb079210 Zea mays HOM05D002802 ORTHO05D003166 1.6e-26 122.1 62 85.5
Zm00001eb425180 Zea mays HOM05D002802 ORTHO05D003166 4.7e-23 110.5 62 79.0
Manes.12G016100 Manihot esculenta HOM05D002802 ORTHO05D003166 3.2e-19 97.8 62 64.5
Migut.K00686 Erythranthe guttata HOM05D002802 ORTHO05D003166 5.4e-19 97.1 62 66.1
HPP92_024690 Vanilla planifolia HOM05D002802 ORTHO05D003166 1.2e-18 95.9 62 62.9
MSTRG.529 Avicennia marina HOM05D002802 ORTHO05D003166 1.6e-18 95.5 64 60.9
Cc02_g30400 Coffea canephora HOM05D002802 ORTHO05D003166 1.6e-18 95.5 62 66.1
Thecc.02G272900 Theobroma cacao HOM05D002802 ORTHO05D003166 2.0e-18 95.1 62 61.3
Lj6P820T73 Lonicera japonica HOM05D002802 ORTHO05D003166 2.7e-18 94.7 61 65.6
Hma1.2p1_0079F.1_g041670 Hydrangea macrophylla HOM05D002802 ORTHO05D003166 4.6e-18 94.0 62 64.5
CSS0015410 Camellia sinensis var. sinensis HOM05D002802 ORTHO05D003166 5.9e-18 93.6 62 62.9
Eucgr.H04678 Eucalyptus grandis HOM05D002802 ORTHO05D003166 5.9e-18 93.6 62 64.5
Gohir.A06G192800 Gossypium hirsutum HOM05D002802 ORTHO05D003166 7.8e-18 93.2 62 58.1
Duzib251G0708 Durio zibethinus HOM05D002802 ORTHO05D003166 1.7e-17 92.0 62 58.1
Gohir.A05G126800 Gossypium hirsutum HOM05D002802 ORTHO05D003166 1.7e-17 92.0 62 58.1
Gorai.009G131900 Gossypium raimondii HOM05D002802 ORTHO05D003166 1.7e-17 92.0 62 58.1
Prupe.1G235100 Prunus persica HOM05D002802 ORTHO05D003166 2.3e-17 91.7 62 62.9
unitig_747.g21135 Utricularia gibba HOM05D002802 ORTHO05D003166 3.0e-17 91.3 64 59.4
Dinv18167 Davidia involucrata HOM05D002802 ORTHO05D003166 3.9e-17 90.9 62 61.3
Duzib248G0802 Durio zibethinus HOM05D002802 ORTHO05D003166 3.9e-17 90.9 62 58.1
Nitab4.5_0004081g0010 Nicotiana tabacum HOM05D002802 ORTHO05D003166 3.9e-17 90.9 62 61.3
MD13G1109900 Malus domestica HOM05D002802 ORTHO05D003166 5.0e-17 90.5 62 61.3
MBI11_g42238_MAGBIO Magnolia biondii HOM05D002802 ORTHO05D003166 6.6e-17 90.1 62 56.5
Nitab4.5_0000233g0160 Nicotiana tabacum HOM05D002802 ORTHO05D003166 6.6e-17 90.1 62 61.3
Sabra10G0050100 Salix brachista HOM05D002802 ORTHO05D003166 6.6e-17 90.1 62 59.7
MSTRG.7969 Avicennia marina HOM05D002802 ORTHO05D003166 8.6e-17 89.7 62 59.7
EL10Ac6g13423 Beta vulgaris HOM05D002802 ORTHO05D003166 8.6e-17 89.7 61 62.3
CiPaw.05G173300 Carya illinoinensis HOM05D002802 ORTHO05D003166 8.6e-17 89.7 62 61.3
CANSAT01G1939 Cannabis sativa HOM05D002802 ORTHO05D003166 1.1e-16 89.4 62 59.7
Gohir.D05G127700 Gossypium hirsutum HOM05D002802 ORTHO05D003166 1.1e-16 89.4 62 54.8
HanXRQChr17g0540051 Helianthus annuus HOM05D002802 ORTHO05D003166 1.1e-16 89.4 61 59.0
Oeu041692.1 Olea europaea HOM05D002802 ORTHO05D003166 1.1e-16 89.4 62 61.3
Potri.010G054800 Populus trichocarpa HOM05D002802 ORTHO05D003166 1.1e-16 89.4 62 58.1
VMungo0251G3304 Vigna mungo HOM05D002802 ORTHO05D003166 1.1e-16 89.4 62 56.5
COL.COLO4_23605 Corchorus olitorius HOM05D002802 ORTHO05D003166 1.5e-16 89.0 62 58.1
Haze_12336 Corylus avellana HOM05D002802 ORTHO05D003166 1.5e-16 89.0 62 61.3
Gohir.D06G200700 Gossypium hirsutum HOM05D002802 ORTHO05D003166 1.5e-16 89.0 62 54.8
Gorai.010G234200 Gossypium raimondii HOM05D002802 ORTHO05D003166 1.5e-16 89.0 62 54.8
Phvul.002G176700 Phaseolus vulgaris HOM05D002802 ORTHO05D003166 1.5e-16 89.0 62 56.5
Aqoxy5G03551 Aquilegia oxysepala HOM05D002802 ORTHO05D003166 1.9e-16 88.6 62 56.5
PGR004G1872 Punica granatum HOM05D002802 ORTHO05D003166 2.5e-16 88.2 63 58.7
TAR622G0786 Trochodendron aralioides HOM05D002802 ORTHO05D003166 2.5e-16 88.2 62 54.8
PGSC0003DMG400028199 Solanum tuberosum HOM05D002802 ORTHO05D003166 3.3e-16 87.8 62 54.8
Lj4g0020754 Lotus japonicus HOM05D002802 ORTHO05D003166 4.3e-16 87.4 62 56.5
MELO3C010723.2 Cucumis melo HOM05D002802 ORTHO05D003166 5.6e-16 87.0 62 56.5
Manes.13G014700 Manihot esculenta HOM05D002802 ORTHO05D003166 5.6e-16 87.0 62 58.1
Sopen10g031570 Solanum pennellii HOM05D002802 ORTHO05D003166 5.6e-16 87.0 62 56.5
TWI36G0807 Tripterygium wilfordii HOM05D002802 ORTHO05D003166 5.6e-16 87.0 62 56.5
TWI75G0092 Tripterygium wilfordii HOM05D002802 ORTHO05D003166 5.6e-16 87.0 62 56.5
AUR62005562 Chenopodium quinoa HOM05D002802 ORTHO05D003166 7.3e-16 86.7 62 59.7
ClCG08G017360 Citrullus lanatus HOM05D002802 ORTHO05D003166 7.3e-16 86.7 62 56.5
CsaV3_2G025260 Cucumis sativus L. HOM05D002802 ORTHO05D003166 7.3e-16 86.7 62 56.5
Solyc10g081050.1 Solanum lycopersicum HOM05D002802 ORTHO05D003166 7.3e-16 86.7 62 54.8
ECA246G3629 Erigeron canadensis HOM05D002802 ORTHO05D003166 9.5e-16 86.3 61 57.4
Peaxi162Scf00108g00093 Petunia axillaris HOM05D002802 ORTHO05D003166 9.5e-16 86.3 62 56.5
THA.LOC104807694 Tarenaya hassleriana HOM05D002802 ORTHO05D003166 9.5e-16 86.3 62 59.7
Ciclev10031836m.g Citrus clementina HOM05D002802 ORTHO05D003166 1.2e-15 85.9 62 58.1
PSO063G1618 Papaver somniferum HOM05D002802 ORTHO05D003166 1.2e-15 85.9 62 54.8
TAR629G1550 Trochodendron aralioides HOM05D002802 ORTHO05D003166 1.2e-15 85.9 61 55.7
Medtr8g080020 Medicago truncatula HOM05D002802 ORTHO05D003166 1.6e-15 85.5 62 58.1
CAN.G128.97 Capsicum annuum HOM05D002802 ORTHO05D003166 2.1e-15 85.1 61 57.4
Lalb_Chr16g0391031 Lupinus albus HOM05D002802 ORTHO05D003166 2.1e-15 85.1 62 56.5
GSVIVG01010323001 Vitis vinifera HOM05D002802 ORTHO05D003166 2.1e-15 85.1 62 56.5
Ca_18068_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 2.8e-15 84.7 62 56.5
AUR62024172 Chenopodium quinoa HOM05D002802 ORTHO05D003166 3.6e-15 84.3 62 58.1
Sed0010507 Sechium edule HOM05D002802 ORTHO05D003166 3.6e-15 84.3 62 54.8
ECA233G4542 Erigeron canadensis HOM05D002802 ORTHO05D003166 4.7e-15 84.0 62 53.2
Rhsim12G0035600 Rhododendron simsii HOM05D002802 ORTHO05D003166 4.7e-15 84.0 62 58.1
Sc04g0009900 Simmondsia chinensis HOM05D002802 ORTHO05D003166 4.7e-15 84.0 62 56.5
TPR.G17072 Trifolium pratense HOM05D002802 ORTHO05D003166 4.7e-15 84.0 62 56.5
Ah.03g133790 Amaranthus hybridus HOM05D002802 ORTHO05D003166 6.2e-15 83.6 61 55.7
Glyma.08G101400 Glycine max HOM05D002802 ORTHO05D003166 8.0e-15 83.2 62 51.6
Aa31LG4G12060 Aethionema arabicum HOM05D002802 ORTHO05D003166 1.0e-14 82.8 62 51.6
FvH4_4g24601 Fragaria vesca HOM05D002802 ORTHO05D003166 1.4e-14 82.4 62 51.6
FAN07G2857 Fragaria x ananassa HOM05D002802 ORTHO05D003166 1.4e-14 82.4 62 51.6
Nn3g16562 Nelumbo nucifera HOM05D002802 ORTHO05D003166 1.4e-14 82.4 62 51.6
Lsat_1_v5_gn_8_151280 Lactuca sativa HOM05D002802 ORTHO05D003166 2.3e-14 81.6 62 51.6
Thhalv10018787m.g Eutrema salsugineum HOM05D002802 ORTHO05D003166 4.0e-14 80.9 63 55.6
SHI17923 Sapria himalayana HOM05D002802 ORTHO05D003166 4.0e-14 80.9 57 57.9
Sp5g22660 Schrenkiella parvula HOM05D002802 ORTHO05D003166 4.0e-14 80.9 63 55.6
Psat7g079200 Pisum sativum HOM05D002802 ORTHO05D003166 6.8e-14 80.1 62 53.2
HanXRQChr12g0372241 Helianthus annuus HOM05D002802 ORTHO05D003166 8.9e-14 79.7 62 50.0
RcHm_v2.0_Chr4g0431611 Rosa chinensis HOM05D002802 ORTHO05D003166 8.9e-14 79.7 62 50.0
Actinidia30681 Actinidia chinensis HOM05D002802 ORTHO05D003166 1.2e-13 79.3 62 50.0
Carub.0002s1404 Capsella rubella HOM05D002802 ORTHO05D003166 1.2e-13 79.3 63 54.0
CARHR060260 Cardamine hirsuta HOM05D002802 ORTHO05D003166 1.2e-13 79.3 63 52.4
QL03p055307 Quercus lobata HOM05D002802 ORTHO05D003166 1.5e-13 79.0 62 50.0
FAN22G1126 Fragaria x ananassa HOM05D002802 ORTHO05D003166 2.6e-13 78.2 62 48.4
SGA_v2.0_scaffold100G29670 Striga asiatica HOM05D002802 ORTHO05D003166 2.6e-13 78.2 64 54.7
AL2G26360 Arabidopsis lyrata HOM05D002802 ORTHO05D003166 3.4e-13 77.8 63 52.4
AT1G67660 Arabidopsis thaliana HOM05D002802 ORTHO05D003166 3.4e-13 77.8 63 52.4
BcaB03g15179 Brassica carinata HOM05D002802 ORTHO05D003166 5.8e-13 77.0 63 52.4
SGA_v2.0_scaffold22G09720 Striga asiatica HOM05D002802 ORTHO05D003166 5.8e-13 77.0 64 53.1
BcaC08g46174 Brassica carinata HOM05D002802 ORTHO05D003166 9.8e-13 76.3 63 52.4
C06p42600 Brassica napus HOM05D002802 ORTHO05D003166 9.8e-13 76.3 63 52.4
BolC6t39179H Brassica oleracea HOM05D002802 ORTHO05D003166 9.8e-13 76.3 63 52.4
A07p34170 Brassica napus HOM05D002802 ORTHO05D003166 1.7e-12 75.5 63 50.8
ATR1132G069 Amborella trichopoda HOM05D002802 ORTHO05D003166 1.9e-11 72.0 63 55.6
ATR0322G049 Amborella trichopoda HOM05D002802 ORTHO05D003166 2.0e-10 68.6 63 54.0
SEGI_08165 Sequoiadendron giganteum HOM05D002802 ORTHO05D003166 2.3e-09 65.1 62 43.5
Actinidia28378 Actinidia chinensis HOM05D002802 ORTHO05D003166 4.3e-08 60.8 64 40.6
Pp3c2_28950 Physcomitrium patens HOM05D002802 ORTHO05D003166 3.6e-07 57.8 58 39.7
Lalb_Chr13g0294111 Lupinus albus HOM05D002802 ORTHO05D003166 8.1e-07 56.6 51 45.1
ATR0589G089 Amborella trichopoda HOM05D002802 ORTHO05D003166 1.1e-06 56.2 62 38.7
QL09p020509 Quercus lobata HOM05D002802 ORTHO05D003166 4.0e-06 54.3 64 32.8
SMO165G0056 Selaginella moellendorffii HOM05D002802 ORTHO05D003166 4.0e-06 54.3 60 40.0
ATR0581G001 Amborella trichopoda HOM05D002802 ORTHO05D003166 6.8e-06 53.5 58 41.4
Glyma.02G215200 Glycine max HOM05D002802 ORTHO05D003166 8.9e-06 53.1 61 37.7


User provided reference genes

Program Settings