Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 1.9e-138 496.1 299 100.0
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 1.9e-87 326.6 232 72.0
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 3.8e-83 312.4 233 70.8
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.1e-57 226.9 230 50.9
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 2.6e-55 219.9 229 50.7
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 3.4e-55 219.5 234 50.9
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 9.8e-55 218.0 260 46.5
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.3e-54 217.6 229 50.7
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.7e-54 217.2 233 49.8
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.7e-54 217.2 229 50.7
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 2.8e-54 216.5 233 50.2
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 4.8e-54 215.7 230 51.3
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 8.3e-54 214.9 229 50.2
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 8.3e-54 214.9 229 49.3
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.4e-53 213.4 230 50.9
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.1e-53 213.0 230 50.9
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 3.1e-53 213.0 229 49.3
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 4.1e-53 212.6 232 50.0
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 4.1e-53 212.6 229 48.9
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 7.0e-53 211.8 232 49.6
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 9.1e-53 211.5 239 51.0
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 1.2e-52 211.1 232 49.6
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 1.6e-52 210.7 229 49.3
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 2.0e-52 210.3 231 49.8
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.7e-52 209.9 231 49.4
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 2.7e-52 209.9 230 50.0
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 4.5e-52 209.1 229 49.3
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 4.5e-52 209.1 232 48.3
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 5.9e-52 208.8 232 47.0
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.7e-51 207.2 257 45.1
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 2.9e-51 206.5 231 47.6
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.9e-51 206.5 232 47.4
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.9e-51 206.5 232 47.4
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.9e-51 206.5 232 49.6
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.8e-51 206.1 231 51.1
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 8.6e-51 204.9 232 50.9
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 8.6e-51 204.9 230 48.3
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.1e-50 204.5 232 49.1
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.1e-50 204.5 234 50.0
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 1.1e-50 204.5 234 48.3
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.9e-50 203.8 227 48.9
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 1.9e-50 203.8 229 48.5
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 2.5e-50 203.4 222 47.7
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.5e-50 203.4 229 49.3
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.5e-50 203.4 232 46.6
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 4.2e-50 202.6 222 47.7
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 4.2e-50 202.6 222 47.7
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 5.5e-50 202.2 232 47.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 5.5e-50 202.2 222 47.3
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 5.5e-50 202.2 222 47.3
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.2e-49 201.1 193 54.4
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.2e-49 201.1 232 47.8
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.6e-49 200.7 232 49.6
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 2.1e-49 200.3 232 46.6
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 2.1e-49 200.3 231 49.4
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-49 200.3 230 49.6
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.1e-49 200.3 229 47.6
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 3.6e-49 199.5 242 45.5
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.6e-49 199.5 229 48.9
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 3.6e-49 199.5 229 48.5
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.7e-49 199.1 232 48.7
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.1e-49 198.7 230 49.1
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 6.1e-49 198.7 229 47.2
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 8.0e-49 198.4 261 43.7
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.0e-48 198.0 240 47.5
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.4e-48 197.6 230 45.7
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.8e-48 197.2 235 47.7
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 2.3e-48 196.8 232 45.3
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 3.0e-48 196.4 232 45.3
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 3.0e-48 196.4 232 48.3
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 4.0e-48 196.1 199 52.3
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 4.0e-48 196.1 232 45.3
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 5.2e-48 195.7 232 45.7
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 8.9e-48 194.9 262 45.0
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 8.9e-48 194.9 229 47.2
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 8.9e-48 194.9 232 49.1
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.2e-47 194.5 232 45.7
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.2e-47 194.5 237 46.0
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.2e-47 194.5 229 44.5
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.5e-47 194.1 229 46.7
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.5e-47 194.1 237 47.7
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.0e-47 193.7 231 48.5
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 2.0e-47 193.7 230 47.0
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 2.6e-47 193.4 232 46.1
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 2.6e-47 193.4 231 45.9
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.4e-47 192.6 230 47.0
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 5.7e-47 192.2 231 45.0
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 5.7e-47 192.2 237 46.8
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 7.5e-47 191.8 229 45.0
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 7.5e-47 191.8 231 46.3
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 7.5e-47 191.8 232 45.7
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 7.5e-47 191.8 197 52.8
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 7.5e-47 191.8 228 43.9
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 9.8e-47 191.4 233 46.4
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.3e-46 191.0 228 44.7
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.7e-46 190.7 230 45.2
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.2e-46 190.3 232 45.3
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 6.3e-46 188.7 227 45.4
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 6.3e-46 188.7 230 43.9
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 8.3e-46 188.3 198 51.0
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.1e-45 188.0 231 45.5
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.4e-45 187.6 262 41.6
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.4e-45 187.6 163 60.1
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.4e-45 186.8 229 45.9
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.4e-45 186.8 233 44.2
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 3.1e-45 186.4 241 42.7
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 5.4e-45 185.7 231 43.7
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 7.0e-45 185.3 224 47.8
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.0e-45 185.3 176 55.7
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 9.2e-45 184.9 235 46.8
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.2e-44 184.5 229 45.9
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.2e-44 184.5 229 45.9
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 2.7e-44 183.3 190 52.1
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 2.7e-44 183.3 233 46.8
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 4.5e-44 182.6 231 45.5
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 7.8e-44 181.8 222 45.5
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 1.0e-43 181.4 162 55.6
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.5e-42 177.6 187 47.6
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 4.3e-42 176.0 265 40.4
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 5.6e-42 175.6 232 47.4
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.1e-41 173.7 264 39.4
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 3.6e-41 172.9 161 54.7
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 4.7e-41 172.6 249 43.8
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 5.2e-40 169.1 174 54.0
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.3e-38 164.5 123 65.0
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.9e-38 163.3 231 42.4
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 9.2e-37 158.3 141 57.4
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 7.8e-36 155.2 235 39.6
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 5.0e-35 152.5 237 42.6
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 1.2e-33 147.9 125 57.6
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 8.9e-32 141.7 238 37.8
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 2.6e-31 140.2 126 53.2
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 7.5e-31 138.7 150 48.7
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 4.1e-29 132.9 239 36.8
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 3.9e-27 126.3 107 65.4
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.8e-25 120.2 204 41.7
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.8e-25 120.2 151 41.7
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 3.4e-23 113.2 82 58.5
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 3.7e-22 109.8 118 52.5
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 3.2e-21 106.7 153 43.1
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.2e-20 104.8 124 46.0
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.2e-20 104.8 122 45.1
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.8e-20 102.1 125 47.2
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.7e-19 100.9 124 46.8
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 3.0e-19 100.1 143 44.8
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 2.6e-15 87.0 120 42.5
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 2.6e-15 87.0 120 42.5
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 2.6e-15 87.0 120 42.5
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 9.2e-13 78.6 77 45.5
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 5.1e-11 72.8 99 45.5
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 4.8e-09 66.2 221 29.4
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.4e-08 63.9 197 30.5
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 3.1e-08 63.5 152 30.3
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 5.3e-08 62.8 47 57.4
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 2.0e-07 60.8 129 34.1
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 5.8e-07 59.3 100 33.0
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 5.8e-07 59.3 125 35.2
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 9.9e-07 58.5 61 49.2
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 9.9e-07 58.5 129 34.1
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 9.9e-07 58.5 137 33.6
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.3e-06 58.2 116 34.5
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.3e-06 58.2 125 35.2
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.7e-06 57.8 125 36.0
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.7e-06 57.8 123 31.7
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 2.2e-06 57.4 101 31.7
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 2.2e-06 57.4 101 31.7
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.2e-06 57.4 115 34.8
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 2.9e-06 57.0 196 27.6
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 2.9e-06 57.0 128 32.8
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 4.9e-06 56.2 125 32.0
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 4.9e-06 56.2 125 32.0
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 4.9e-06 56.2 131 29.0
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 6.4e-06 55.8 131 32.8
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 8.4e-06 55.5 78 35.9
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 8.4e-06 55.5 116 31.9
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 8.4e-06 55.5 116 34.5
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 8.4e-06 55.5 125 32.0


User provided reference genes

Program Settings