Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0483000 Oryza sativa ssp. japonica HOM05D000734 ORTHO05D005054 1.7e-41 172.6 110 100.0
Zm00001eb246230 Zea mays HOM05D000734 ORTHO05D005054 6.8e-22 107.5 95 83.2
Zm00001eb079320 Zea mays HOM05D000734 ORTHO05D005054 2.6e-21 105.5 93 76.3
Os02g0597700 Oryza sativa ssp. japonica HOM05D000734 ORTHO05D005054 5.8e-21 104.4 96 78.1
Zm00001eb183910 Zea mays HOM05D000734 ORTHO05D005054 1.6e-18 96.3 92 79.3
PSO782G3635 Papaver somniferum HOM05D000734 ORTHO05D005054 2.9e-12 75.5 56 64.3
Nn4g22497 Nelumbo nucifera HOM05D000734 ORTHO05D005054 3.8e-12 75.1 52 69.2
Medtr6g022040 Medicago truncatula HOM05D000734 ORTHO05D005054 4.2e-11 71.6 48 64.6
Nn3g16610 Nelumbo nucifera HOM05D000734 ORTHO05D005054 4.2e-11 71.6 91 61.5
Medtr6g022020 Medicago truncatula HOM05D000734 ORTHO05D005054 5.4e-11 71.2 51 64.7
Ca_04393_v3 Cicer arietinum L. HOM05D000734 ORTHO05D005054 1.2e-10 70.1 50 66.0
Manes.17G108900 Manihot esculenta HOM05D000734 ORTHO05D005054 1.2e-10 70.1 53 62.3
QL02p073454 Quercus lobata HOM05D000734 ORTHO05D005054 1.2e-10 70.1 95 64.2
SGA_v2.0_scaffold135G34927 Striga asiatica HOM05D000734 ORTHO05D005054 1.2e-10 70.1 96 45.8
MSTRG.3277 Avicennia marina HOM05D000734 ORTHO05D005054 1.6e-10 69.7 97 45.4
CAN.G473.41 Capsicum annuum HOM05D000734 ORTHO05D005054 2.1e-10 69.3 52 61.5
Sabra16G0219600 Salix brachista HOM05D000734 ORTHO05D005054 2.1e-10 69.3 51 64.7
Actinidia36146 Actinidia chinensis HOM05D000734 ORTHO05D005054 2.7e-10 68.9 92 56.5
TPR.G21636 Trifolium pratense HOM05D000734 ORTHO05D005054 2.7e-10 68.9 50 64.0
MSTRG.24054 Avicennia marina HOM05D000734 ORTHO05D005054 3.5e-10 68.6 94 59.6
Glyma.19G054400 Glycine max HOM05D000734 ORTHO05D005054 3.5e-10 68.6 94 45.7
Rhsim10G0012900 Rhododendron simsii HOM05D000734 ORTHO05D005054 3.5e-10 68.6 94 46.8
RhsimUnG0004800 Rhododendron simsii HOM05D000734 ORTHO05D005054 3.5e-10 68.6 94 46.8
Nitab4.5_0001031g0270 Nicotiana tabacum HOM05D000734 ORTHO05D005054 4.6e-10 68.2 94 51.1
PGR083G1529 Punica granatum HOM05D000734 ORTHO05D005054 4.6e-10 68.2 50 64.0
CANSAT64G0952 Cannabis sativa HOM05D000734 ORTHO05D005054 6.0e-10 67.8 99 53.5
Dinv25709 Davidia involucrata HOM05D000734 ORTHO05D005054 6.0e-10 67.8 51 62.7
Duzib147G0240 Durio zibethinus HOM05D000734 ORTHO05D005054 6.0e-10 67.8 50 68.0
Migut.K01425 Erythranthe guttata HOM05D000734 ORTHO05D005054 6.0e-10 67.8 97 50.5
Peaxi162Scf00420g00143 Petunia axillaris HOM05D000734 ORTHO05D005054 6.0e-10 67.8 94 45.7
Nitab4.5_0005414g0010 Nicotiana tabacum HOM05D000734 ORTHO05D005054 7.8e-10 67.4 52 61.5
Oeu050447.1 Olea europaea HOM05D000734 ORTHO05D005054 7.8e-10 67.4 97 43.3
Psat1g082920 Pisum sativum HOM05D000734 ORTHO05D005054 7.8e-10 67.4 49 63.3
vmacro05901 Vaccinium macrocarpon HOM05D000734 ORTHO05D005054 7.8e-10 67.4 52 61.5
Aqoxy5G03617 Aquilegia oxysepala HOM05D000734 ORTHO05D005054 1.0e-09 67.0 51 64.7
ECA246G0542 Erigeron canadensis HOM05D000734 ORTHO05D005054 1.0e-09 67.0 52 61.5
Lsat_1_v5_gn_4_184641 Lactuca sativa HOM05D000734 ORTHO05D005054 1.0e-09 67.0 105 50.5
Os01g0907200 Oryza sativa ssp. japonica HOM05D000734 ORTHO05D005054 1.0e-09 67.0 64 54.7
Potri.001G339100 Populus trichocarpa HOM05D000734 ORTHO05D005054 1.0e-09 67.0 93 48.4
Thecc.04G024400 Theobroma cacao HOM05D000734 ORTHO05D005054 1.0e-09 67.0 50 66.0
Haze_14790 Corylus avellana HOM05D000734 ORTHO05D005054 1.3e-09 66.6 50 64.0
Duzib187G0957 Durio zibethinus HOM05D000734 ORTHO05D005054 1.3e-09 66.6 50 64.0
Lalb_Chr02g0158051 Lupinus albus HOM05D000734 ORTHO05D005054 1.3e-09 66.6 49 63.3
Phvul.004G059000 Phaseolus vulgaris HOM05D000734 ORTHO05D005054 1.3e-09 66.6 94 46.8
VMungo0464G0083 Vigna mungo HOM05D000734 ORTHO05D005054 1.3e-09 66.6 54 59.3
Cfa007304 Carpinus fangiana HOM05D000734 ORTHO05D005054 1.7e-09 66.2 50 64.0
HanXRQChr17g0549421 Helianthus annuus HOM05D000734 ORTHO05D005054 1.7e-09 66.2 51 64.7
HanXRQChr14g0451051 Helianthus annuus HOM05D000734 ORTHO05D005054 2.3e-09 65.9 56 58.9
Nitab4.5_0000040g0510 Nicotiana tabacum HOM05D000734 ORTHO05D005054 2.3e-09 65.9 95 44.2
Psat1g082960 Pisum sativum HOM05D000734 ORTHO05D005054 2.3e-09 65.9 49 61.2
CSS0018613 Camellia sinensis var. sinensis HOM05D000734 ORTHO05D005054 3.0e-09 65.5 97 48.5
Oeu062393.1 Olea europaea HOM05D000734 ORTHO05D005054 3.0e-09 65.5 94 45.7
Rhsim08G0047200 Rhododendron simsii HOM05D000734 ORTHO05D005054 3.0e-09 65.5 49 61.2
RhsimUnG0151100 Rhododendron simsii HOM05D000734 ORTHO05D005054 3.0e-09 65.5 49 61.2
TWI12G1321 Tripterygium wilfordii HOM05D000734 ORTHO05D005054 3.0e-09 65.5 99 52.5
COL.COLO4_29235 Corchorus olitorius HOM05D000734 ORTHO05D005054 3.9e-09 65.1 95 45.3
Lsat_1_v5_gn_0_21761 Lactuca sativa HOM05D000734 ORTHO05D005054 3.9e-09 65.1 51 60.8
SalBow7G1320 Salvia bowleyana HOM05D000734 ORTHO05D005054 3.9e-09 65.1 55 56.4
TAR622G0085 Trochodendron aralioides HOM05D000734 ORTHO05D005054 3.9e-09 65.1 51 64.7
Lsat_1_v5_gn_2_93441 Lactuca sativa HOM05D000734 ORTHO05D005054 5.1e-09 64.7 51 68.6
BcaB01g06377 Brassica carinata HOM05D000734 ORTHO05D005054 6.6e-09 64.3 50 60.0
CSS0016429 Camellia sinensis var. sinensis HOM05D000734 ORTHO05D005054 6.6e-09 64.3 94 67.0
HanXRQChr09g0255921 Helianthus annuus HOM05D000734 ORTHO05D005054 6.6e-09 64.3 52 59.6
FAN09G0275 Fragaria x ananassa HOM05D000734 ORTHO05D005054 8.7e-09 63.9 93 43.0
Oeu054651.1 Olea europaea HOM05D000734 ORTHO05D005054 8.7e-09 63.9 50 60.0
Peaxi162Scf00700g00232 Petunia axillaris HOM05D000734 ORTHO05D005054 8.7e-09 63.9 54 61.1
RcHm_v2.0_Chr2g0173771 Rosa chinensis HOM05D000734 ORTHO05D005054 1.1e-08 63.5 50 58.0
GSVIVG01003981001 Vitis vinifera HOM05D000734 ORTHO05D005054 1.1e-08 63.5 94 44.7
BcaB01g05116 Brassica carinata HOM05D000734 ORTHO05D005054 1.5e-08 63.2 50 58.0
C03p07590 Brassica napus HOM05D000734 ORTHO05D005054 1.5e-08 63.2 50 58.0
BolC3t13260H Brassica oleracea HOM05D000734 ORTHO05D005054 1.5e-08 63.2 50 58.0
BraA03t09989Z Brassica rapa HOM05D000734 ORTHO05D005054 1.5e-08 63.2 50 58.0
CiPaw.04G031800 Carya illinoinensis HOM05D000734 ORTHO05D005054 1.5e-08 63.2 53 60.4
FvH4_6g52220 Fragaria vesca HOM05D000734 ORTHO05D005054 1.5e-08 63.2 93 43.0
FAN14G1010 Fragaria x ananassa HOM05D000734 ORTHO05D005054 1.5e-08 63.2 93 43.0
Zm00001eb365220 Zea mays HOM05D000734 ORTHO05D005054 1.5e-08 63.2 59 55.9
Eucgr.J02267 Eucalyptus grandis HOM05D000734 ORTHO05D005054 1.9e-08 62.8 53 56.6
HanXRQChr07g0199111 Helianthus annuus HOM05D000734 ORTHO05D005054 1.9e-08 62.8 55 58.2
HanXRQChr15g0474611 Helianthus annuus HOM05D000734 ORTHO05D005054 1.9e-08 62.8 50 60.0
Lj2g0024940 Lotus japonicus HOM05D000734 ORTHO05D005054 1.9e-08 62.8 50 58.0
AL6G25070 Arabidopsis lyrata HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 60.4
AT5G14360 Arabidopsis thaliana HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 60.4
BcaC03g13496 Brassica carinata HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 60.4
BcaNung03163 Brassica carinata HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 60.4
A02p02450 Brassica napus HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 60.4
C02p06710 Brassica napus HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 60.4
BolC2t06615H Brassica oleracea HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 60.4
BraA02t05215Z Brassica rapa HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 60.4
Carub.0006s1254 Capsella rubella HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 60.4
Thhalv10014879m.g Eutrema salsugineum HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 58.3
Sp6g29670 Schrenkiella parvula HOM05D000734 ORTHO05D005054 2.5e-08 62.4 48 58.3
vmacro18305 Vaccinium macrocarpon HOM05D000734 ORTHO05D005054 2.5e-08 62.4 97 45.4
CiPaw.03G048300 Carya illinoinensis HOM05D000734 ORTHO05D005054 4.3e-08 61.6 95 51.6
Ciclev10016973m.g Citrus clementina HOM05D000734 ORTHO05D005054 4.3e-08 61.6 49 63.3
Duzib264G0405 Durio zibethinus HOM05D000734 ORTHO05D005054 4.3e-08 61.6 50 60.0
Manes.15G154500 Manihot esculenta HOM05D000734 ORTHO05D005054 4.3e-08 61.6 50 64.0
Gohir.D09G031700 Gossypium hirsutum HOM05D000734 ORTHO05D005054 5.6e-08 61.2 51 62.7
Gorai.006G036700 Gossypium raimondii HOM05D000734 ORTHO05D005054 5.6e-08 61.2 51 62.7
PSO063G3873 Papaver somniferum HOM05D000734 ORTHO05D005054 5.6e-08 61.2 105 56.2
Sc16g0003750 Simmondsia chinensis HOM05D000734 ORTHO05D005054 5.6e-08 61.2 52 55.8
Solyc02g093610.3 Solanum lycopersicum HOM05D000734 ORTHO05D005054 7.3e-08 60.8 51 56.9
Gohir.A07G225000 Gossypium hirsutum HOM05D000734 ORTHO05D005054 9.6e-08 60.5 50 62.0
Gohir.D07G232200 Gossypium hirsutum HOM05D000734 ORTHO05D005054 9.6e-08 60.5 50 62.0
ECA232G1900 Erigeron canadensis HOM05D000734 ORTHO05D005054 1.3e-07 60.1 51 58.8
Sed0024890 Sechium edule HOM05D000734 ORTHO05D005054 1.3e-07 60.1 54 55.6
MD09G1019600 Malus domestica HOM05D000734 ORTHO05D005054 1.6e-07 59.7 54 57.4
MD17G1020200 Malus domestica HOM05D000734 ORTHO05D005054 1.6e-07 59.7 54 57.4
Aa31LG11G15150 Aethionema arabicum HOM05D000734 ORTHO05D005054 2.1e-07 59.3 48 58.3
arahy.Tifrunner.gnm1.ann1.J7GT2L Arachis hypogaea HOM05D000734 ORTHO05D005054 2.1e-07 59.3 100 40.0
Prupe.3G296800 Prunus persica HOM05D000734 ORTHO05D005054 2.1e-07 59.3 54 55.6
Atru.chr6.2465 Acer truncatum HOM05D000734 ORTHO05D005054 2.8e-07 58.9 50 62.0
ClCG09G019530 Citrullus lanatus HOM05D000734 ORTHO05D005054 2.8e-07 58.9 54 55.6
Gorai.001G267400 Gossypium raimondii HOM05D000734 ORTHO05D005054 2.8e-07 58.9 50 62.0
Lalb_Chr02g0158041 Lupinus albus HOM05D000734 ORTHO05D005054 2.8e-07 58.9 49 59.2
Gohir.A09G031700 Gossypium hirsutum HOM05D000734 ORTHO05D005054 3.6e-07 58.5 51 60.8
PGSC0003DMG400006966 Solanum tuberosum HOM05D000734 ORTHO05D005054 3.6e-07 58.5 55 52.7
Cc07_g00210 Coffea canephora HOM05D000734 ORTHO05D005054 4.8e-07 58.2 58 51.7
Glyma.16G066700 Glycine max HOM05D000734 ORTHO05D005054 4.8e-07 58.2 51 56.9
HanXRQChr15g0486351 Helianthus annuus HOM05D000734 ORTHO05D002090 4.8e-07 58.2 54 55.6
Zm00001eb148980 Zea mays HOM05D000734 ORTHO05D002223 4.8e-07 58.2 48 56.2
CARHR198960 Cardamine hirsuta HOM05D000734 ORTHO05D005054 6.2e-07 57.8 48 54.2
CDE02G3945 Ceratophyllum demersum HOM05D006807 ORTHO05D008528 6.2e-07 57.8 53 54.7
SGA_v2.0_scaffold154G37140 Striga asiatica HOM05D000734 ORTHO05D005054 6.2e-07 57.8 97 49.5
THA.LOC104825344 Tarenaya hassleriana HOM05D000734 ORTHO05D002223 1.1e-06 57.0 50 62.0
MELO3C021609.2 Cucumis melo HOM05D000734 ORTHO05D005054 1.4e-06 56.6 54 53.7
CsaV3_5G026850 Cucumis sativus L. HOM05D000734 ORTHO05D005054 1.4e-06 56.6 54 53.7
ECA238G0163 Erigeron canadensis HOM05D000734 ORTHO05D005054 1.4e-06 56.6 56 55.4
Phvul.008G147200 Phaseolus vulgaris HOM05D000734 ORTHO05D005054 1.4e-06 56.6 52 53.8
MBI02_g26598_MAGBIO Magnolia biondii HOM05D000734 ORTHO05D002223 1.8e-06 56.2 49 53.1
THA.LOC104821104 Tarenaya hassleriana HOM05D000734 ORTHO05D005054 1.8e-06 56.2 48 52.1
Os01g0831200 Oryza sativa ssp. japonica HOM05D000734 ORTHO05D002223 2.4e-06 55.8 48 58.3
Sopen02g038040 Solanum pennellii HOM05D000734 ORTHO05D005054 2.4e-06 55.8 51 54.9
Sopen02g038240 Solanum pennellii HOM05D000734 ORTHO05D005054 2.4e-06 55.8 51 54.9
PGSC0003DMG400012641 Solanum tuberosum HOM05D000734 ORTHO05D005054 2.4e-06 55.8 51 54.9
ATR0824G079 Amborella trichopoda HOM05D000734 ORTHO05D005054 3.1e-06 55.5 55 49.1
Cpa.g.c38550 Carica papaya HOM05D000734 ORTHO05D005054 3.1e-06 55.5 48 56.2
Lju41A45T58 Lonicera japonica HOM05D000734 ORTHO05D005054 3.1e-06 55.5 107 37.4
TAR633G2349 Trochodendron aralioides HOM05D000734 ORTHO05D002223 3.1e-06 55.5 52 51.9
Sed0007145 Sechium edule HOM05D000734 ORTHO05D005054 4.0e-06 55.1 55 49.1
VMungo1383G2582 Vigna mungo HOM05D000734 ORTHO05D005054 4.0e-06 55.1 53 50.9
HPP92_017053 Vanilla planifolia HOM05D000734 ORTHO05D005054 6.9e-06 54.3 52 55.8
Duzib168G2210 Durio zibethinus HOM05D000734 ORTHO05D002223 9.0e-06 53.9 52 51.9
Glyma.19G080300 Glycine max HOM05D000734 ORTHO05D005054 9.0e-06 53.9 51 54.9
Lj1g0019974 Lotus japonicus HOM05D000734 ORTHO05D005054 9.0e-06 53.9 53 52.8
TAR375G1096 Trochodendron aralioides HOM05D000734 ORTHO05D002090 9.0e-06 53.9 55 50.9


User provided reference genes

Program Settings