Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 9.7e-108 394.4 382 100.0
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.6e-36 157.1 285 55.4
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 3.8e-35 153.3 286 52.8
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 6.4e-35 152.5 286 53.1
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 8.4e-35 152.1 287 53.3
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.1e-34 151.8 286 52.4
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 7.1e-34 149.1 287 53.3
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 9.3e-34 148.7 286 53.1
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.7e-33 147.1 289 52.6
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.7e-33 147.1 286 52.1
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.7e-33 147.1 286 52.1
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 3.5e-33 146.7 287 52.6
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.5e-33 146.7 286 53.8
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 4.6e-33 146.4 287 51.9
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 6.0e-33 146.0 286 51.0
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.0e-33 146.0 286 53.5
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 7.9e-33 145.6 287 45.3
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 7.9e-33 145.6 286 51.0
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.0e-32 145.2 287 52.6
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.0e-32 145.2 286 52.4
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.8e-32 144.4 286 52.1
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.8e-32 144.4 286 52.4
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 2.3e-32 144.1 283 51.9
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 2.3e-32 144.1 286 52.4
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 5.1e-32 142.9 285 52.3
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 6.7e-32 142.5 283 51.6
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 6.7e-32 142.5 286 52.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 6.7e-32 142.5 288 50.7
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 8.7e-32 142.1 286 52.1
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.5e-31 141.4 286 51.7
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.5e-31 141.4 288 46.9
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.9e-31 141.0 286 51.4
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.9e-31 141.0 287 50.5
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.9e-31 141.0 288 50.3
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.5e-31 140.6 286 51.0
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 3.3e-31 140.2 286 52.1
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.3e-31 140.2 288 51.7
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 5.6e-31 139.4 286 50.7
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 7.4e-31 139.0 287 50.5
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 7.4e-31 139.0 288 49.7
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 9.6e-31 138.7 287 52.6
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.3e-30 138.3 286 51.4
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.6e-30 137.9 286 51.7
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 2.1e-30 137.5 287 50.5
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.8e-30 137.1 286 50.0
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.8e-30 137.1 286 49.7
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 3.7e-30 136.7 286 51.4
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 3.7e-30 136.7 286 51.4
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.7e-30 136.7 287 51.2
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.7e-30 136.7 286 55.9
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.7e-30 136.7 287 50.5
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 3.7e-30 136.7 291 51.2
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.7e-30 136.7 285 52.3
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 6.2e-30 136.0 286 49.7
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 8.1e-30 135.6 286 50.3
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.1e-29 135.2 287 50.2
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.4e-29 134.8 287 50.5
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 1.4e-29 134.8 286 51.4
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.4e-29 134.8 285 51.9
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.8e-29 134.4 286 50.3
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.8e-29 134.4 286 51.4
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.8e-29 134.4 286 48.6
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 2.4e-29 134.0 288 50.3
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 2.4e-29 134.0 286 52.1
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.4e-29 134.0 288 49.7
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 4.0e-29 133.3 287 46.3
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.3e-29 132.9 286 50.7
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 5.3e-29 132.9 286 51.0
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 9.0e-29 132.1 308 31.5
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 9.0e-29 132.1 286 49.7
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.2e-28 131.7 287 50.9
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.0e-28 131.0 259 52.1
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.6e-28 130.6 286 49.3
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 4.5e-28 129.8 286 49.0
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 4.5e-28 129.8 286 50.0
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 5.8e-28 129.4 287 56.1
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.3e-27 128.3 286 49.7
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.3e-27 128.3 286 49.3
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.7e-27 127.9 287 42.2
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 2.2e-27 127.5 288 51.0
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.2e-27 127.5 286 49.0
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.9e-27 127.1 286 48.6
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.8e-27 126.7 287 48.8
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.8e-27 126.7 286 56.3
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 4.9e-27 126.3 286 48.6
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 4.9e-27 126.3 287 54.7
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 4.9e-27 126.3 286 49.7
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 8.4e-27 125.6 286 48.6
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 1.1e-26 125.2 288 49.7
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.9e-26 124.4 280 50.4
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 3.2e-26 123.6 286 48.6
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 4.2e-26 123.2 286 48.6
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 9.3e-26 122.1 286 48.6
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.3e-26 122.1 313 29.7
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.3e-24 118.2 291 47.4
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.8e-24 117.9 286 48.3
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 6.7e-24 115.9 286 45.8
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.9e-23 114.4 172 41.3
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.9e-23 114.4 170 40.0
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 2.5e-23 114.0 64 84.4
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.3e-23 113.2 172 39.0
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 4.3e-23 113.2 286 49.3
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 7.4e-23 112.5 285 48.4
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-22 111.3 172 39.0
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 3.7e-22 110.2 172 39.0
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 5.3e-21 106.3 363 41.6
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 5.3e-21 106.3 289 47.8
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 6.9e-21 105.9 314 44.9
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.5e-20 104.8 238 51.7
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 2.0e-20 104.4 324 28.1
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.6e-20 104.0 172 37.2
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.0e-19 102.1 172 37.8
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 8.4e-19 99.0 172 36.0
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.5e-18 97.4 163 66.3
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 9.3e-18 95.5 286 46.5
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 3.5e-17 93.6 163 63.8
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.8e-13 81.3 156 65.4
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.4e-13 80.9 144 38.9
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 4.1e-13 80.1 166 36.7
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 2.6e-12 77.4 168 33.9
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 4.5e-12 76.6 288 47.9
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.9e-11 73.9 238 47.9
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.0e-11 73.2 182 33.5
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.0e-11 73.2 142 67.6
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.9e-10 71.2 131 37.4
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 3.2e-10 70.5 85 41.2
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 3.6e-09 67.0 270 44.8
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.0e-08 65.5 181 32.0
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 5.1e-08 63.2 164 31.1
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-07 62.0 181 30.9
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.8e-06 57.4 128 67.2


User provided reference genes

Program Settings