Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 7.7e-121 437.2 225 100.0
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 7.3e-95 350.9 225 80.4
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.2e-65 253.8 214 65.4
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.5e-63 246.1 207 66.7
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 3.3e-63 245.7 203 66.0
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 5.6e-63 245.0 202 66.3
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 1.6e-62 243.4 201 65.2
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 3.6e-62 242.3 202 65.3
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 4.8e-62 241.9 203 63.5
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 6.2e-62 241.5 203 64.5
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 6.2e-62 241.5 206 63.6
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.1e-61 240.7 201 64.7
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.8e-61 240.0 206 63.6
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 1.8e-61 240.0 230 60.0
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 2.4e-61 239.6 219 62.6
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 2.4e-61 239.6 194 67.5
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 5.3e-61 238.4 228 60.5
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 6.9e-61 238.0 203 63.5
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 1.5e-60 236.9 207 61.8
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 1.5e-60 236.9 205 64.4
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 1.5e-60 236.9 205 64.4
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 2.6e-60 236.1 201 63.2
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 3.4e-60 235.7 203 62.1
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 3.4e-60 235.7 214 60.7
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 3.4e-60 235.7 196 65.3
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 5.8e-60 235.0 198 66.2
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 7.6e-60 234.6 203 63.5
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.3e-59 233.8 203 63.5
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.3e-59 233.8 203 64.5
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.7e-59 233.4 206 63.1
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.7e-59 233.4 201 62.7
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.7e-59 233.4 201 62.7
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 2.2e-59 233.0 205 62.9
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.2e-59 233.0 201 62.7
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 2.2e-59 233.0 200 64.5
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 2.9e-59 232.6 230 57.0
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 2.9e-59 232.6 203 63.5
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.9e-59 232.6 201 62.7
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 2.9e-59 232.6 206 64.6
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 3.8e-59 232.3 201 62.7
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 3.8e-59 232.3 200 64.5
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 3.8e-59 232.3 206 64.6
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.9e-59 231.9 201 62.7
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.9e-59 231.9 219 60.3
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.9e-59 231.9 223 59.6
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 6.4e-59 231.5 203 63.1
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 6.4e-59 231.5 203 62.6
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 8.4e-59 231.1 203 62.6
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 8.4e-59 231.1 223 59.6
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 8.4e-59 231.1 205 61.0
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 1.1e-58 230.7 224 58.5
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 1.1e-58 230.7 195 65.1
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.9e-58 229.9 204 61.8
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.9e-58 229.9 200 62.0
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 2.4e-58 229.6 201 62.7
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 2.4e-58 229.6 205 63.4
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 3.2e-58 229.2 207 61.8
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 4.2e-58 228.8 204 60.3
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 4.2e-58 228.8 205 63.4
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 7.1e-58 228.0 198 64.1
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 7.1e-58 228.0 203 63.1
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 7.1e-58 228.0 205 62.9
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 7.1e-58 228.0 223 60.1
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 9.3e-58 227.6 210 59.0
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 1.6e-57 226.9 202 59.9
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 2.1e-57 226.5 223 57.8
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 2.7e-57 226.1 230 57.0
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 3.5e-57 225.7 196 65.3
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 3.5e-57 225.7 153 74.5
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 4.6e-57 225.3 202 60.9
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.0e-56 224.2 224 56.2
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 1.3e-56 223.8 232 55.2
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.3e-56 223.8 152 75.7
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 1.7e-56 223.4 216 59.3
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 1.7e-56 223.4 247 54.3
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 3.0e-56 222.6 221 57.0
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 3.0e-56 222.6 202 59.4
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 3.0e-56 222.6 217 59.0
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 3.9e-56 222.2 221 57.0
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 3.9e-56 222.2 195 64.1
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 6.6e-56 221.5 210 59.5
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 8.7e-56 221.1 205 60.0
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.1e-55 220.7 193 65.3
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 3.3e-55 219.2 201 61.2
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 5.6e-55 218.4 208 59.6
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 5.6e-55 218.4 223 55.2
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 5.6e-55 218.4 225 55.1
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 9.6e-55 217.6 229 55.9
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 9.6e-55 217.6 212 58.0
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 2.1e-54 216.5 149 73.8
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 3.6e-54 215.7 154 71.4
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.5e-52 210.3 202 58.9
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 2.0e-52 209.9 187 62.0
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 2.6e-52 209.5 190 61.6
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.8e-51 205.7 207 57.0
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.3e-46 190.7 242 48.8
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 6.2e-46 188.3 229 51.5
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 2.2e-43 179.9 190 57.4
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 3.7e-38 162.5 154 57.1
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 6.9e-37 158.3 218 47.2
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 9.0e-37 157.9 154 55.8
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 4.5e-36 155.6 213 45.1
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.9e-35 152.9 207 48.8
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 6.1e-33 145.2 112 66.1
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.0e-32 142.9 204 44.6
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 8.7e-32 141.4 153 47.7
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 5.3e-29 132.1 183 46.4
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 2.2e-27 126.7 133 50.4
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.2e-26 122.5 92 67.4
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 2.8e-22 109.8 162 43.8
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.5e-20 104.0 130 43.8
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 1.6e-17 94.0 152 41.4
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.0e-16 91.3 92 55.4
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 3.1e-13 79.7 174 35.1
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 6.7e-08 62.0 84 46.4
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 2.6e-07 60.1 36 80.6
Os03g0801300 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 2.8e-06 56.6 25 92.0


User provided reference genes

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