Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 1.1e-20 102.4 54 100.0
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 4.5e-11 70.5 54 68.5
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 1.7e-10 68.6 54 63.0
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 2.3e-10 68.2 54 63.0
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 3.9e-10 67.4 54 63.0
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 3.9e-10 67.4 52 59.6
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 3.9e-10 67.4 54 64.8
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 5.0e-10 67.0 54 63.0
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 5.0e-10 67.0 54 63.0
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 5.0e-10 67.0 54 63.0
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 5.0e-10 67.0 54 61.1
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 5.0e-10 67.0 54 61.1
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 6.6e-10 66.6 54 61.1
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 6.6e-10 66.6 53 62.3
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 6.6e-10 66.6 54 63.0
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 8.6e-10 66.2 54 66.7
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 8.6e-10 66.2 54 61.1
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 1.5e-09 65.5 54 63.0
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 1.9e-09 65.1 45 66.7
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 1.9e-09 65.1 54 57.4
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 2.5e-09 64.7 54 53.7
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 2.1e-08 61.6 49 59.2
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.1e-08 61.6 49 59.2
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.1e-08 61.6 49 59.2
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 8.0e-08 59.7 54 59.3
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 1.0e-07 59.3 50 58.0
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.4e-07 58.9 53 54.7
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 1.4e-07 58.9 54 57.4
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 2.3e-07 58.2 49 55.1
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 4.0e-07 57.4 49 55.1
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 4.0e-07 57.4 54 59.3
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 4.0e-07 57.4 54 59.3
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 6.8e-07 56.6 48 56.2
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.8e-07 56.6 54 59.3
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 8.9e-07 56.2 53 56.6
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 8.9e-07 56.2 54 53.7
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.2e-06 55.8 54 55.6
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.5e-06 55.5 53 50.9
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 2.0e-06 55.1 52 59.6
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 2.0e-06 55.1 52 59.6
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 2.0e-06 55.1 52 59.6
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 2.0e-06 55.1 52 59.6
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 3.4e-06 54.3 52 57.7
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 4.4e-06 53.9 52 57.7
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 4.4e-06 53.9 52 57.7
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 4.4e-06 53.9 52 57.7
SEGI_19148 Sequoiadendron giganteum HOM05D008101 ORTHO05D010163 4.4e-06 53.9 48 52.1
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 5.8e-06 53.5 52 57.7
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 5.8e-06 53.5 47 63.8
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 7.5e-06 53.1 54 51.9
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 7.5e-06 53.1 54 48.1
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 9.8e-06 52.8 52 53.8
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 9.8e-06 52.8 52 57.7
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 9.8e-06 52.8 54 48.1


User provided reference genes

Program Settings