Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 2.7e-109 398.7 203 100.0
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 5.2e-92 341.3 200 84.0
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 6.0e-80 301.2 203 72.4
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.2e-75 287.0 200 71.5
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 3.4e-75 285.4 202 68.3
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 7.5e-75 284.3 203 69.5
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 9.8e-75 283.9 202 70.3
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.7e-74 283.1 202 70.3
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.7e-74 283.1 201 71.1
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.4e-73 280.0 202 69.3
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.9e-73 279.6 203 69.5
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 2.4e-73 279.3 197 70.1
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.2e-73 278.9 198 70.7
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 5.4e-73 278.1 198 68.7
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 9.2e-73 277.3 202 67.3
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 4.6e-72 275.0 203 67.5
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 6.0e-72 274.6 198 68.2
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.3e-71 273.5 198 67.7
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.7e-71 273.1 202 67.3
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 2.3e-71 272.7 203 67.5
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.3e-71 272.7 198 68.7
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-71 272.7 198 68.7
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 3.0e-71 272.3 203 67.0
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 3.0e-71 272.3 203 67.5
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 3.9e-71 271.9 202 67.3
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 6.6e-71 271.2 198 69.7
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 6.6e-71 271.2 203 67.0
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 6.6e-71 271.2 198 68.7
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 8.6e-71 270.8 197 65.5
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 8.6e-71 270.8 198 68.7
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.1e-70 270.4 201 67.2
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.1e-70 270.4 198 68.7
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.9e-70 269.6 202 65.8
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.9e-70 269.6 201 67.2
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 3.3e-70 268.9 202 65.3
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 3.3e-70 268.9 195 70.8
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.3e-70 268.5 198 67.7
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 4.3e-70 268.5 189 69.3
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.3e-70 268.5 201 66.7
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 4.3e-70 268.5 198 68.2
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 5.6e-70 268.1 192 68.8
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 7.3e-70 267.7 203 66.0
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 7.3e-70 267.7 203 66.5
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 7.3e-70 267.7 201 65.7
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 7.3e-70 267.7 202 65.3
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.2e-69 266.9 201 65.2
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 2.8e-69 265.8 189 68.3
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 2.8e-69 265.8 202 64.4
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.8e-69 265.8 194 69.1
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 3.6e-69 265.4 202 66.3
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 4.7e-69 265.0 203 65.5
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 6.2e-69 264.6 203 67.0
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.2e-69 264.6 198 66.7
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 8.1e-69 264.2 189 68.3
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.1e-68 263.8 198 66.7
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.1e-68 263.8 189 68.3
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 1.1e-68 263.8 198 68.2
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.3e-68 262.7 203 63.5
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.3e-68 262.7 205 63.9
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 2.3e-68 262.7 202 65.3
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 4.0e-68 261.9 202 65.3
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 4.0e-68 261.9 202 65.3
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 5.2e-68 261.5 199 62.8
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 6.8e-68 261.2 203 63.5
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 6.8e-68 261.2 203 63.5
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 8.9e-68 260.8 203 63.5
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 8.9e-68 260.8 203 63.5
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 8.9e-68 260.8 199 65.8
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 8.9e-68 260.8 198 66.7
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-67 260.4 203 63.5
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 1.5e-67 260.0 202 65.3
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.0e-67 259.6 198 66.2
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 2.0e-67 259.6 195 66.7
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 3.4e-67 258.8 203 63.1
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 4.4e-67 258.5 202 64.4
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 5.8e-67 258.1 201 63.2
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 7.6e-67 257.7 198 66.7
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.3e-66 256.9 198 64.1
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 1.7e-66 256.5 198 65.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.7e-66 256.5 203 63.5
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.2e-66 256.1 190 67.4
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 2.9e-66 255.8 203 63.5
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 2.9e-66 255.8 198 62.1
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.7e-66 255.4 199 65.8
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 3.7e-66 255.4 198 64.1
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.9e-66 255.0 194 64.4
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 4.9e-66 255.0 198 61.6
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 8.4e-66 254.2 189 66.1
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.4e-65 253.4 185 64.9
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 2.4e-65 252.7 196 66.3
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 2.7e-64 249.2 199 63.3
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.6e-64 248.4 180 65.6
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 6.0e-64 248.1 206 61.7
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.3e-63 246.9 198 60.6
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 5.1e-63 245.0 194 61.3
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 6.6e-63 244.6 203 62.1
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.5e-62 242.7 184 66.8
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 2.5e-62 242.7 199 60.3
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 5.6e-62 241.5 203 61.6
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 5.6e-62 241.5 195 59.5
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 7.3e-62 241.1 199 60.8
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.6e-61 240.0 181 64.6
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 8.1e-61 237.7 201 62.2
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.8e-60 236.5 178 63.5
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 4.0e-60 235.3 205 61.0
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 8.9e-60 234.2 181 65.2
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.2e-59 233.8 198 62.1
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.6e-59 232.6 179 63.7
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.7e-58 229.9 199 58.8
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 1.7e-58 229.9 200 60.5
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.9e-57 226.5 170 68.2
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 2.4e-57 226.1 333 42.9
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 3.2e-57 225.7 190 61.1
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 3.5e-56 222.2 190 60.5
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 5.6e-54 214.9 238 52.1
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.1e-53 213.0 222 52.7
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 6.2e-53 211.5 199 54.3
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 8.1e-53 211.1 189 58.7
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.4e-52 209.5 252 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.7e-50 203.4 195 53.3
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 5.4e-49 198.4 199 49.7
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.9e-47 192.2 233 49.4
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 2.5e-46 189.5 220 49.5
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 5.6e-46 188.3 195 52.3
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 6.2e-45 184.9 167 56.3
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 2.9e-42 176.0 128 68.0
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.5e-40 169.1 223 47.5
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 6.7e-39 164.9 199 44.7
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 7.4e-38 161.4 106 74.5
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.4e-36 157.1 173 49.1
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 1.2e-35 154.1 120 60.0
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 1.2e-35 154.1 103 71.8
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.9e-33 146.7 166 50.0
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.3e-31 139.8 116 60.3
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.9e-30 136.7 209 38.8
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 5.7e-30 135.2 81 77.8
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.6e-29 133.7 87 73.6
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 4.1e-28 129.0 112 59.8
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-26 124.0 70 84.3
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-26 124.0 70 84.3
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 9.3e-25 117.9 103 57.3
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.1e-24 115.2 79 68.4
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 7.9e-24 114.8 90 61.1
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.0e-23 114.4 199 39.2
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.8e-21 106.3 127 47.2
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 3.2e-17 92.8 101 50.5
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 1.2e-16 90.9 195 32.3
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.7e-16 89.7 74 59.5
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.0e-15 87.8 130 42.3
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 3.0e-15 86.3 77 54.5
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 8.8e-15 84.7 73 56.2
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 3.3e-14 82.8 77 51.9
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.3e-14 82.8 69 58.0
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-13 80.9 68 55.9
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.7e-13 80.5 78 53.8
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.4e-12 77.4 45 80.0
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 3.1e-12 76.3 194 30.4
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.5e-11 73.9 103 42.7
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.4e-11 72.8 113 41.6
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.9e-09 67.0 49 63.3
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.5e-06 57.4 43 60.5


User provided reference genes

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