Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0448950 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 4.2e-81 304.7 160 100.0
Zm00001eb081470 Zea mays HOM05D002878 ORTHO05D003649 3.3e-41 172.2 156 64.1
SalBow5G1901 Salvia bowleyana HOM05D002878 ORTHO05D003649 7.1e-36 154.5 91 81.3
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 3.5e-35 152.1 96 75.0
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 7.8e-35 151.0 105 71.4
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 1.0e-34 150.6 109 71.6
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 1.7e-34 149.8 124 66.1
Lalb_Chr00c02g0404101 Lupinus albus HOM05D002878 ORTHO05D003649 2.3e-34 149.4 128 61.7
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 2.3e-34 149.4 105 73.3
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 3.9e-34 148.7 91 79.1
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 5.1e-34 148.3 98 74.5
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 5.1e-34 148.3 91 79.1
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 6.6e-34 147.9 97 75.3
ClCG02G012500 Citrullus lanatus HOM05D002878 ORTHO05D003649 8.7e-34 147.5 113 68.1
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 8.7e-34 147.5 113 68.1
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 8.7e-34 147.5 94 75.5
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 1.1e-33 147.1 110 69.1
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 1.1e-33 147.1 91 75.8
TPR.G30697 Trifolium pratense HOM05D002878 ORTHO05D003649 1.1e-33 147.1 91 76.9
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 1.5e-33 146.7 91 74.7
Lalb_Chr16g0378561 Lupinus albus HOM05D002878 ORTHO05D003649 1.5e-33 146.7 91 78.0
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 1.5e-33 146.7 91 78.0
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 1.5e-33 146.7 97 74.2
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 1.9e-33 146.4 91 76.9
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 1.9e-33 146.4 91 76.9
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 1.9e-33 146.4 97 70.1
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 1.9e-33 146.4 88 78.4
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 1.9e-33 146.4 88 78.4
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 1.9e-33 146.4 106 67.9
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 1.9e-33 146.4 97 73.2
Medtr5g017350 Medicago truncatula HOM05D002878 ORTHO05D003649 1.9e-33 146.4 91 76.9
Psat2g167360 Pisum sativum HOM05D002878 ORTHO05D003649 1.9e-33 146.4 91 76.9
VMungo1215G2613 Vigna mungo HOM05D002878 ORTHO05D003649 1.9e-33 146.4 133 62.4
Carub.0008s2747 Capsella rubella HOM05D002878 ORTHO05D003649 2.5e-33 146.0 91 74.7
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 2.5e-33 146.0 91 75.8
Phvul.002G018700 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 2.5e-33 146.0 133 60.9
SGA_v2.0_scaffold15G07306 Striga asiatica HOM05D002878 ORTHO05D003649 2.5e-33 146.0 115 65.2
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 3.3e-33 145.6 91 75.8
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 3.3e-33 145.6 91 75.8
CDE10G0029 Ceratophyllum demersum HOM05D002878 ORTHO05D003649 3.3e-33 145.6 90 75.6
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 3.3e-33 145.6 96 70.8
Dinv39845 Davidia involucrata HOM05D002878 ORTHO05D003649 3.3e-33 145.6 91 74.7
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 3.3e-33 145.6 88 78.4
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 3.3e-33 145.6 88 80.7
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 3.3e-33 145.6 95 74.7
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 3.3e-33 145.6 126 63.5
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 3.3e-33 145.6 108 69.4
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 4.3e-33 145.2 95 72.6
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 4.3e-33 145.2 91 75.8
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 4.3e-33 145.2 91 72.5
Oeu031955.2 Olea europaea HOM05D002878 ORTHO05D003649 4.3e-33 145.2 91 74.7
MSTRG.2882 Avicennia marina HOM05D002878 ORTHO05D003649 5.6e-33 144.8 88 77.3
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 5.6e-33 144.8 113 66.4
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 5.6e-33 144.8 91 74.7
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 5.6e-33 144.8 88 79.5
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 7.3e-33 144.4 90 76.7
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 7.3e-33 144.4 88 76.1
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 7.3e-33 144.4 88 76.1
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 7.3e-33 144.4 91 73.6
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 7.3e-33 144.4 108 68.5
Hund16322 Selenicereus undatus HOM05D002878 ORTHO05D003649 7.3e-33 144.4 91 74.7
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 9.6e-33 144.1 109 64.2
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 9.6e-33 144.1 109 64.2
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 9.6e-33 144.1 109 64.2
Cpa.g.sc55.146 Carica papaya HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 75.8
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 75.8
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 75.8
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 75.8
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 75.8
FAN26G1304 Fragaria x ananassa HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 75.8
FAN28G1157 Fragaria x ananassa HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 75.8
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 75.8
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 74.7
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 9.6e-33 144.1 95 73.7
unitig_27.g25327 Utricularia gibba HOM05D002878 ORTHO05D003649 9.6e-33 144.1 91 71.4
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 1.3e-32 143.7 91 73.6
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 1.3e-32 143.7 105 66.7
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 1.3e-32 143.7 91 72.5
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 1.6e-32 143.3 105 65.7
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 1.6e-32 143.3 94 73.4
Potri.007G044300 Populus trichocarpa HOM05D002878 ORTHO05D003649 1.6e-32 143.3 95 72.6
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 1.6e-32 143.3 91 72.5
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 1.6e-32 143.3 95 71.6
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 2.1e-32 142.9 91 71.4
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 2.1e-32 142.9 91 72.5
Ciclev10027323m.g Citrus clementina HOM05D002878 ORTHO05D003649 2.1e-32 142.9 91 73.6
Cc07_g06010 Coffea canephora HOM05D002878 ORTHO05D003649 2.1e-32 142.9 91 72.5
Duzib147G1525 Durio zibethinus HOM05D002878 ORTHO05D003649 2.1e-32 142.9 95 70.5
MD15G1284500 Malus domestica HOM05D002878 ORTHO05D003649 2.1e-32 142.9 98 69.4
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 2.1e-32 142.9 95 72.6
TAR628G0235 Trochodendron aralioides HOM05D002878 ORTHO05D003649 2.1e-32 142.9 91 73.6
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.8e-32 142.5 91 72.5
Ah.03g145010 Amaranthus hybridus HOM05D002878 ORTHO05D003649 3.6e-32 142.1 97 69.1
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 3.6e-32 142.1 87 78.2
Gorai.007G213500 Gossypium raimondii HOM05D002878 ORTHO05D003649 3.6e-32 142.1 90 71.1
Prupe.7G133100 Prunus persica HOM05D002878 ORTHO05D003649 3.6e-32 142.1 115 61.7
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 3.6e-32 142.1 91 73.6
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 3.6e-32 142.1 91 71.4
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 3.6e-32 142.1 91 71.4
TAR376G0143 Trochodendron aralioides HOM05D002878 ORTHO05D003649 3.6e-32 142.1 90 74.4
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 3.6e-32 142.1 122 59.0
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 4.8e-32 141.7 122 59.8
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 4.8e-32 141.7 91 71.4
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 6.2e-32 141.4 91 72.5
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 6.2e-32 141.4 91 71.4
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 8.1e-32 141.0 108 62.0
Gohir.A11G192600 Gossypium hirsutum HOM05D002878 ORTHO05D003649 8.1e-32 141.0 90 70.0
Sabra05G0112100 Salix brachista HOM05D002878 ORTHO05D003649 8.1e-32 141.0 94 74.5
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 8.1e-32 141.0 91 70.3
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 1.1e-31 140.6 101 66.3
Pp3c4_13840 Physcomitrium patens HOM05D002878 ORTHO05D003649 1.1e-31 140.6 91 74.7
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 1.4e-31 140.2 141 52.5
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 2.4e-31 139.4 94 71.3
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 3.1e-31 139.0 85 74.1
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 3.1e-31 139.0 91 71.4
Pp3c12_10330 Physcomitrium patens HOM05D002878 ORTHO05D003649 1.2e-30 137.1 91 71.4
Eucgr.I00923 Eucalyptus grandis HOM05D002878 ORTHO05D003649 1.5e-30 136.7 94 70.2
HanXRQChr04g0117341 Helianthus annuus HOM05D002878 ORTHO05D003649 1.5e-30 136.7 91 68.1
ATR0605G380 Amborella trichopoda HOM05D002878 ORTHO05D003649 2.0e-30 136.3 91 68.1
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 2.0e-30 136.3 81 77.8
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.6e-30 136.0 86 76.7
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 2.6e-30 136.0 91 68.1
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 2.6e-30 136.0 91 68.1
Migut.K00348 Erythranthe guttata HOM05D002878 ORTHO05D003649 3.4e-30 135.6 109 64.2
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 3.4e-30 135.6 114 63.2
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 4.5e-30 135.2 81 75.3
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 4.5e-30 135.2 81 75.3
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 4.5e-30 135.2 81 75.3
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 4.5e-30 135.2 81 75.3
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 4.5e-30 135.2 81 75.3
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 7.6e-30 134.4 81 75.3
Dinv43928 Davidia involucrata HOM05D002878 ORTHO05D003649 1.3e-29 133.7 91 68.1
Phvul.011G214600 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 1.3e-29 133.7 101 65.3
GSVIVG01001372001 Vitis vinifera HOM05D002878 ORTHO05D003649 1.3e-29 133.7 91 69.2
Potri.001G229100 Populus trichocarpa HOM05D002878 ORTHO05D003649 1.7e-29 133.3 91 67.0
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 2.2e-29 132.9 80 75.0
Lsat_1_v5_gn_9_111181 Lactuca sativa HOM05D002878 ORTHO05D003649 2.2e-29 132.9 91 68.1
Manes.10G150700 Manihot esculenta HOM05D002878 ORTHO05D003649 2.2e-29 132.9 91 67.0
QL04p000093 Quercus lobata HOM05D002878 ORTHO05D003649 2.9e-29 132.5 91 67.0
QL04p003128 Quercus lobata HOM05D002878 ORTHO05D003649 2.9e-29 132.5 91 67.0
CSS0041624 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 3.8e-29 132.1 91 67.0
Dinv05186 Davidia involucrata HOM05D002878 ORTHO05D003649 6.4e-29 131.3 85 72.9
VMungo1127G0209 Vigna mungo HOM05D002878 ORTHO05D003649 6.4e-29 131.3 101 63.4
Sabra16G0136700 Salix brachista HOM05D002878 ORTHO05D003649 8.4e-29 131.0 91 65.9
SMO134G0128 Selaginella moellendorffii HOM05D002878 ORTHO05D003649 8.4e-29 131.0 87 69.0
Atru.chr11.2692 Acer truncatum HOM05D002878 ORTHO05D003649 1.1e-28 130.6 91 63.7
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 1.1e-28 130.6 80 73.8
Dinv32074 Davidia involucrata HOM05D002878 ORTHO05D003649 1.1e-28 130.6 85 74.1
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 1.1e-28 130.6 91 65.9
Medtr4g022850 Medicago truncatula HOM05D002878 ORTHO05D003649 1.1e-28 130.6 91 64.8
DCAR_015695 Daucus carota HOM05D002878 ORTHO05D003649 1.4e-28 130.2 116 56.9
PSO384G3105 Papaver somniferum HOM05D002878 ORTHO05D003649 1.9e-28 129.8 91 63.7
ECA236G1248 Erigeron canadensis HOM05D002878 ORTHO05D003649 2.4e-28 129.4 91 62.6
Actinidia31701 Actinidia chinensis HOM05D002878 ORTHO05D003649 4.2e-28 128.6 91 62.6
TAR633G2681 Trochodendron aralioides HOM05D002878 ORTHO05D003649 4.2e-28 128.6 91 63.7
Glyma.09G000600 Glycine max HOM05D002878 ORTHO05D003649 5.4e-28 128.3 101 62.4
Rhsim07G0050700 Rhododendron simsii HOM05D001227 ORTHO05D001082 5.4e-28 128.3 117 54.7
Lj3g0027459 Lotus japonicus HOM05D002878 ORTHO05D003649 7.1e-28 127.9 91 67.0
MBI01_g33890_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 7.1e-28 127.9 91 63.7
QL07p005912 Quercus lobata HOM05D002878 ORTHO05D003649 9.3e-28 127.5 91 67.0
CBR_g2783 Chara braunii HOM05D002878 ORTHO05D003649 1.2e-27 127.1 91 68.1
vmacro13619 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 1.2e-27 127.1 128 52.3
MD07G1003000 Malus domestica HOM05D002878 ORTHO05D003649 2.7e-27 125.9 91 67.0
Dinv30763 Davidia involucrata HOM05D002878 ORTHO05D003649 3.5e-27 125.6 84 70.2
Lalb_Chr01g0008141 Lupinus albus HOM05D002878 ORTHO05D003649 4.6e-27 125.2 91 64.8
MD02G1318300 Malus domestica HOM05D002878 ORTHO05D003649 2.3e-26 122.9 133 51.9
Medtr4g134870 Medicago truncatula HOM05D002878 ORTHO05D003649 2.3e-26 122.9 88 68.2
Cre02.g082550 Chlamydomonas reinhardtii HOM05D002878 ORTHO05D003649 2.5e-25 119.4 92 59.8
Prupe.2G004500 Prunus persica HOM05D002878 ORTHO05D003649 2.5e-25 119.4 138 50.0
Glyma.12G240501 Glycine max HOM05D002878 ORTHO05D003649 1.6e-24 116.7 88 67.0
Migut.B01365 Erythranthe guttata HOM05D002878 ORTHO05D003649 4.8e-24 115.2 88 59.1
SGA_v2.0_scaffold260G45879 Striga asiatica HOM05D002878 ORTHO05D003649 4.0e-23 112.1 91 57.1
CARHR126560 Cardamine hirsuta HOM05D002878 ORTHO05D003649 3.2e-20 102.4 74 64.9
Migut.B01363 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.1e-19 99.8 88 51.1
Lj9A623T48 Lonicera japonica HOM05D002878 ORTHO05D003649 8.7e-18 94.4 80 57.5
Zm00001eb302340 Zea mays HOM05D000113 ORTHO05D001108 5.6e-17 91.7 62 75.8
Glyma.01G186202 Glycine max HOM05D002878 ORTHO05D003649 4.8e-16 88.6 57 70.2
CARHR217720 Cardamine hirsuta HOM05D002878 ORTHO05D003649 1.1e-12 77.4 53 66.0
MCO16G227 Micromonas commoda HOM05D002878 ORTHO05D003649 5.5e-12 75.1 87 46.0
PRCOL_00004396 Prasinoderma coloniale HOM05D002878 ORTHO05D003649 5.1e-10 68.6 93 44.1
Zm00001eb383390 Zea mays HOM05D000113 ORTHO05D001108 5.1e-10 68.6 46 73.9
ECA246G0767 Erigeron canadensis HOM05D001165 ORTHO05D001347 1.6e-08 63.5 106 37.7
Prupe.2G004400 Prunus persica HOM05D002878 ORTHO05D003649 3.7e-08 62.4 40 70.0
PRCOL_00000700 Prasinoderma coloniale HOM05D002878 ORTHO05D003649 6.3e-08 61.6 81 40.7
Nn4g23554 Nelumbo nucifera HOM05D002878 ORTHO05D003649 8.2e-08 61.2 52 57.7
Dinv05450 Davidia involucrata HOM05D002878 ORTHO05D003649 9.0e-07 57.8 40 65.0


User provided reference genes

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