Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 1.0e-68 263.8 199 100.0
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 6.8e-36 154.8 199 43.7
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 4.7e-21 105.5 169 40.2
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 3.0e-20 102.8 199 32.2
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 1.3e-18 97.4 190 30.0
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 3.7e-18 95.9 196 27.0
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 6.4e-18 95.1 196 27.6
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.4e-17 94.0 197 28.9
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 1.4e-17 94.0 197 27.9
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.4e-17 93.2 197 27.9
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 2.4e-17 93.2 196 28.1
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 4.1e-17 92.4 192 28.6
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 5.4e-17 92.0 192 27.1
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 9.2e-17 91.3 190 28.4
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.0e-16 90.1 190 27.9
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.0e-16 90.1 196 28.6
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 2.7e-16 89.7 192 26.6
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 3.5e-16 89.4 197 32.0
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 4.6e-16 89.0 198 27.8
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 4.6e-16 89.0 191 28.3
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 7.8e-16 88.2 198 27.8
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.0e-15 87.8 197 26.9
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.0e-15 87.8 197 26.9
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.0e-15 87.8 197 26.9
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.3e-15 87.4 189 29.6
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.3e-15 87.4 196 26.5
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.7e-15 87.0 192 27.1
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 1.7e-15 87.0 191 28.8
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 3.0e-15 86.3 197 25.4
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.9e-15 85.9 196 27.6
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 6.6e-15 85.1 194 27.3
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 6.6e-15 85.1 195 27.7
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.6e-15 84.7 196 30.1
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.5e-14 84.0 197 25.4
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.5e-14 84.0 192 25.5
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 3.3e-14 82.8 197 27.9
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 4.3e-14 82.4 196 27.6
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.3e-14 82.4 197 25.9
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.2e-13 80.9 187 26.7
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.1e-13 80.1 186 26.3
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 2.1e-13 80.1 196 27.0
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.8e-13 79.7 196 24.0
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.6e-13 79.3 187 24.6
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.4e-12 77.4 202 26.2
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 1.8e-12 77.0 188 28.2
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.8e-12 77.0 191 26.2
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 4.0e-12 75.9 181 23.8
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 4.0e-12 75.9 197 27.4
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 4.0e-12 75.9 196 25.5
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 5.2e-12 75.5 190 25.8
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 8.9e-12 74.7 196 26.0
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.2e-11 74.3 195 22.1
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.5e-11 73.9 190 22.1
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 4.4e-11 72.4 195 21.0
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 5.8e-11 72.0 195 20.5
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 5.8e-11 72.0 194 26.8
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.3e-10 70.9 190 21.6
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.2e-10 70.1 212 25.9
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 2.9e-10 69.7 180 26.1
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 8.3e-10 68.2 191 20.9
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 8.3e-10 68.2 59 49.2
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.4e-09 67.4 190 21.1
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 2.4e-09 66.6 188 24.5
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 4.1e-09 65.9 63 46.0
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 7.0e-09 65.1 63 49.2
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 7.0e-09 65.1 191 21.5
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 7.0e-09 65.1 191 21.5
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 9.2e-09 64.7 190 21.6
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 9.2e-09 64.7 63 49.2
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.2e-08 64.3 189 25.9
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 1.2e-08 64.3 191 21.5
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 1.6e-08 63.9 60 43.3
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 1.6e-08 63.9 191 20.4
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 1.6e-08 63.9 56 50.0
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 1.6e-08 63.9 60 48.3
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.6e-08 63.9 55 52.7
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.6e-08 63.9 63 46.0
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.7e-08 63.2 63 47.6
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 4.6e-08 62.4 60 43.3
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 6.0e-08 62.0 60 41.7
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 6.0e-08 62.0 63 49.2
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 7.8e-08 61.6 63 42.9
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 7.8e-08 61.6 55 49.1
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 7.8e-08 61.6 61 42.6
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.0e-07 61.2 63 42.9
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 1.0e-07 61.2 61 45.9
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.3e-07 60.8 61 47.5
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.3e-07 60.1 63 44.4
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 2.3e-07 60.1 56 48.2
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 3.0e-07 59.7 55 49.1
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 6.6e-07 58.5 56 48.2
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 2.5e-06 56.6 57 49.1


User provided reference genes

Program Settings