Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.7e-55 216.9 106 100.0
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.5e-37 158.7 95 74.7
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.8e-36 155.2 95 74.7
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 4.7e-36 154.5 95 74.7
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.0e-35 151.8 95 72.6
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.0e-35 151.8 95 73.7
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 4.0e-35 151.4 95 73.7
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 4.0e-35 151.4 95 73.7
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 5.2e-35 151.0 95 72.6
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 8.9e-35 150.2 95 73.7
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.0e-34 149.1 95 71.6
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 2.6e-34 148.7 95 71.6
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 3.4e-34 148.3 95 69.5
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 3.4e-34 148.3 95 70.5
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 5.7e-34 147.5 95 70.5
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 7.5e-34 147.1 95 72.6
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 7.5e-34 147.1 95 71.6
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 9.8e-34 146.7 95 67.4
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 9.8e-34 146.7 95 72.6
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.3e-33 146.4 95 69.5
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.3e-33 146.4 95 69.5
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.3e-33 146.4 95 71.6
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.7e-33 146.0 95 68.4
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.7e-33 146.0 95 69.5
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 2.9e-33 145.2 95 70.5
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 2.9e-33 145.2 95 71.6
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.7e-33 144.8 95 69.5
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 3.7e-33 144.8 95 69.5
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.9e-33 144.4 95 70.5
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.9e-33 144.4 95 70.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 4.9e-33 144.4 95 68.4
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 6.4e-33 144.1 95 70.5
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 8.3e-33 143.7 95 68.4
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.1e-32 143.3 95 67.4
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.1e-32 143.3 95 69.5
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.1e-32 143.3 95 68.4
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.4e-32 142.9 95 71.6
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-32 142.5 95 68.4
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.8e-32 142.5 95 68.4
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 2.4e-32 142.1 95 67.4
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 4.1e-32 141.4 95 67.4
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 4.1e-32 141.4 95 68.4
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.1e-32 141.4 95 68.4
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.1e-32 141.4 95 68.4
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.1e-32 141.4 95 68.4
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.1e-32 141.4 95 68.4
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 4.1e-32 141.4 95 68.4
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.4e-32 141.0 95 66.3
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 5.4e-32 141.0 95 67.4
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 7.0e-32 140.6 95 66.3
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 9.2e-32 140.2 95 66.3
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 9.2e-32 140.2 95 66.3
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 9.2e-32 140.2 95 67.4
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 9.2e-32 140.2 95 68.4
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.2e-31 139.8 95 67.4
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.6e-31 139.4 95 68.4
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.6e-31 139.4 95 68.4
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.6e-31 139.4 95 68.4
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.0e-31 139.0 95 70.5
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 2.0e-31 139.0 95 66.3
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.0e-31 139.0 95 68.4
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 2.0e-31 139.0 95 68.4
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.0e-31 139.0 103 62.1
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 2.7e-31 138.7 95 67.4
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 3.5e-31 138.3 95 69.5
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 4.6e-31 137.9 95 68.4
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 4.6e-31 137.9 95 65.3
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 5.9e-31 137.5 95 67.4
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 5.9e-31 137.5 95 69.5
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 5.9e-31 137.5 95 66.3
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 5.9e-31 137.5 95 65.3
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 7.8e-31 137.1 95 65.3
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 7.8e-31 137.1 95 67.4
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 7.8e-31 137.1 95 67.4
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 7.8e-31 137.1 95 67.4
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 7.8e-31 137.1 95 65.3
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-30 136.3 94 68.1
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.3e-30 136.3 95 67.4
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 2.3e-30 135.6 95 67.4
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 2.3e-30 135.6 95 67.4
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.3e-30 135.6 95 62.1
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.3e-30 135.6 95 66.3
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 5.0e-30 134.4 95 66.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 5.0e-30 134.4 95 65.3
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 5.0e-30 134.4 95 65.3
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 6.6e-30 134.0 95 64.2
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 6.6e-30 134.0 95 66.3
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 8.6e-30 133.7 95 63.2
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.1e-29 133.3 99 64.6
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.5e-29 132.9 95 63.2
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 1.5e-29 132.9 95 62.1
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.9e-29 132.5 93 64.5
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.9e-29 132.5 93 64.5
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.5e-29 132.1 95 63.2
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 3.3e-29 131.7 95 65.3
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 5.6e-29 131.0 95 64.2
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.2e-28 129.8 103 61.2
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.2e-28 129.8 95 65.3
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.6e-28 129.4 95 65.3
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.8e-28 128.6 95 64.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 4.7e-28 127.9 95 64.2
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 4.7e-28 127.9 95 64.2
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.7e-28 127.9 95 62.1
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 6.2e-28 127.5 95 60.0
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 6.2e-28 127.5 95 62.1
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 8.0e-28 127.1 95 60.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 2.3e-27 125.6 95 63.2
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.3e-27 125.6 95 63.2
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 3.1e-27 125.2 95 63.2
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 3.1e-27 125.2 95 61.1
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.1e-27 125.2 95 63.2
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 5.2e-27 124.4 95 58.9
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.5e-26 122.9 95 57.9
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.5e-26 122.9 95 55.8
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 2.6e-26 122.1 95 60.0
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 3.4e-26 121.7 95 58.9
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 7.5e-26 120.6 95 55.8
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 1.9e-24 115.9 143 45.5
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.7e-17 92.8 64 64.1
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.7e-17 92.8 72 56.9
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.3e-14 82.4 60 60.0
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.0e-06 55.5 38 60.5


User provided reference genes

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