Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 3.6e-202 708.0 342 100.0
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 6.1e-162 574.3 346 83.2
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 7.8e-141 504.2 348 71.0
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.1e-139 500.4 345 70.7
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 2.8e-138 495.7 348 69.5
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 1.1e-137 493.8 344 68.6
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 1.8e-137 493.0 338 70.4
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.8e-137 493.0 345 69.9
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 8.9e-137 490.7 334 69.2
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.2e-136 490.3 350 67.7
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 3.4e-136 488.8 348 67.0
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 5.8e-136 488.0 347 67.7
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 1.7e-135 486.5 346 66.5
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 6.4e-135 484.6 346 66.8
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 2.4e-134 482.6 345 65.8
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 9.2e-134 480.7 345 68.1
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 9.2e-134 480.7 349 67.0
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 1.6e-133 479.9 345 67.0
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 2.1e-133 479.6 345 66.7
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 4.6e-133 478.4 345 67.8
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.0e-132 477.2 345 66.4
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.3e-132 476.9 336 68.2
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 2.3e-132 476.1 337 67.4
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 2.3e-132 476.1 338 68.3
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 3.0e-132 475.7 345 67.8
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.0e-132 475.7 348 66.1
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.1e-132 474.9 345 65.8
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 5.1e-132 474.9 342 66.7
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 6.6e-132 474.6 348 66.4
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 6.6e-132 474.6 345 65.8
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 6.6e-132 474.6 348 66.4
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.5e-131 473.4 349 65.6
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.5e-131 473.4 349 65.6
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.9e-131 473.0 338 68.0
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 2.5e-131 472.6 343 67.1
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 2.5e-131 472.6 346 66.8
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 3.3e-131 472.2 344 66.0
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 3.3e-131 472.2 338 66.0
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 3.3e-131 472.2 341 66.6
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 9.6e-131 470.7 339 67.0
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 9.6e-131 470.7 333 68.5
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 9.6e-131 470.7 343 66.2
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 2.1e-130 469.5 348 65.5
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 2.8e-130 469.2 344 65.7
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 2.8e-130 469.2 344 65.4
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 3.6e-130 468.8 349 65.3
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.6e-130 468.8 344 65.4
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.7e-130 468.4 344 65.1
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 8.1e-130 467.6 344 66.3
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 1.4e-129 466.8 337 66.8
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.4e-129 466.8 345 63.8
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 1.4e-129 466.8 344 64.8
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.8e-129 466.5 344 64.8
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 2.4e-129 466.1 334 67.1
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 2.4e-129 466.1 349 65.0
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.4e-129 466.1 345 64.1
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 9.0e-129 464.2 340 67.4
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.2e-128 463.8 375 61.9
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 1.5e-128 463.4 349 65.3
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 1.5e-128 463.4 349 65.3
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.5e-128 463.4 342 65.8
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 2.6e-128 462.6 348 64.9
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 3.4e-128 462.2 349 65.3
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.4e-128 462.2 335 66.6
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 4.4e-128 461.8 349 64.8
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 4.4e-128 461.8 338 66.3
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.3e-127 460.3 338 66.0
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.7e-127 459.9 375 60.3
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 3.8e-127 458.8 347 64.0
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 4.9e-127 458.4 348 64.1
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 8.4e-127 457.6 350 62.9
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 1.1e-126 457.2 350 62.9
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.9e-126 456.4 335 65.7
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 2.4e-126 456.1 357 62.2
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 4.2e-126 455.3 337 66.5
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 5.4e-126 454.9 334 66.2
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 9.3e-126 454.1 345 64.1
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 1.2e-125 453.8 339 65.8
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 1.2e-125 453.8 334 65.6
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 4.6e-125 451.8 345 62.3
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 7.8e-125 451.1 344 64.2
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 7.8e-125 451.1 346 62.4
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 1.0e-124 450.7 332 66.3
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 1.3e-124 450.3 340 63.5
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 3.0e-124 449.1 338 63.6
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 1.5e-123 446.8 290 71.4
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 4.3e-123 445.3 294 70.7
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 4.3e-123 445.3 333 64.3
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 4.3e-123 445.3 344 63.1
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 7.3e-123 444.5 340 62.9
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 1.3e-122 443.7 341 63.0
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 6.2e-122 441.4 398 56.5
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 1.4e-121 440.3 342 64.0
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 1.8e-121 439.9 322 65.5
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 9.0e-121 437.6 345 60.6
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 1.5e-120 436.8 336 64.3
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 5.8e-120 434.9 319 63.6
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 1.4e-118 430.3 328 62.5
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 9.3e-118 427.6 337 60.5
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 2.1e-117 426.4 300 68.0
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.2e-111 406.4 244 73.4
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 4.9e-111 405.2 333 59.2
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 8.4e-111 404.4 232 77.6
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.9e-110 403.3 244 72.5
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 7.1e-110 401.4 244 74.2
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.0e-108 397.5 323 61.3
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.3e-103 380.6 336 57.4
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 7.1e-102 374.8 301 60.8
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.5e-99 366.3 331 57.1
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 3.8e-95 352.4 232 70.7
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 6.7e-92 341.7 323 56.0
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 2.2e-90 336.7 292 60.3
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 7.7e-88 328.2 328 52.4
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.9e-86 323.6 242 62.0
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 6.3e-82 308.5 242 64.5
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 2.5e-78 296.6 236 64.0
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 7.2e-78 295.0 232 65.1
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 6.7e-76 288.5 241 59.8
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 8.8e-76 288.1 241 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 2.1e-69 266.9 175 70.9
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.0e-63 248.1 244 50.4
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.8e-58 229.9 165 64.2
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.8e-57 227.3 200 55.0
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 7.0e-57 225.3 198 55.1
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 9.5e-54 214.9 199 52.3
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 6.3e-50 202.2 180 55.0
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.5e-46 191.0 180 57.8
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 2.3e-28 130.6 72 81.9
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 3.7e-26 123.2 79 69.6
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 5.8e-19 99.4 56 73.2
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 2.2e-10 70.9 53 64.2


User provided reference genes

Program Settings