Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 9.1e-110 400.2 197 100.0
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 6.2e-90 334.3 197 81.2
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 6.0e-69 264.6 198 64.1
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.3e-68 263.5 198 65.2
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 8.7e-68 260.8 198 64.1
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.5e-67 259.2 198 62.6
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.3e-67 258.8 198 62.1
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 7.3e-67 257.7 198 63.1
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.3e-66 256.9 198 62.1
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.8e-66 255.0 198 61.6
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 4.8e-66 255.0 198 63.1
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 6.2e-66 254.6 198 61.6
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 2.4e-65 252.7 198 61.1
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 4.0e-65 251.9 198 61.6
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 5.3e-65 251.5 198 60.6
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 6.9e-65 251.1 198 61.6
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.5e-64 250.0 198 61.1
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.5e-64 250.0 198 61.1
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.5e-64 250.0 198 61.1
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.5e-64 250.0 198 59.6
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.5e-64 250.0 198 61.1
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 2.6e-64 249.2 198 59.1
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 2.6e-64 249.2 198 59.1
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 3.4e-64 248.8 198 61.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 5.8e-64 248.1 198 58.6
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 5.8e-64 248.1 198 59.6
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 7.6e-64 247.7 198 58.6
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 2.2e-63 246.1 198 60.1
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 3.8e-63 245.4 198 59.6
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 3.8e-63 245.4 198 60.1
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 4.9e-63 245.0 200 58.5
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 4.9e-63 245.0 198 58.6
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.9e-63 245.0 198 60.6
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.9e-63 245.0 198 60.6
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 6.4e-63 244.6 198 58.1
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 6.4e-63 244.6 198 58.1
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 6.4e-63 244.6 198 57.6
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 6.4e-63 244.6 198 58.6
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.1e-62 243.8 198 58.1
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.1e-62 243.8 199 59.8
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.1e-62 243.8 198 59.1
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.4e-62 243.4 198 59.1
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.4e-62 243.4 241 52.7
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.9e-62 243.0 198 59.1
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 2.4e-62 242.7 198 56.6
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 3.2e-62 242.3 198 57.6
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.2e-62 242.3 198 57.6
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 4.2e-62 241.9 198 59.6
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.2e-62 241.9 198 56.1
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 4.2e-62 241.9 198 57.6
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.4e-62 241.5 198 56.1
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 5.4e-62 241.5 198 56.1
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 5.4e-62 241.5 233 54.1
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 7.1e-62 241.1 198 57.1
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 7.1e-62 241.1 198 58.1
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 9.3e-62 240.7 198 57.1
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 9.3e-62 240.7 198 57.6
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.6e-61 240.0 198 56.6
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.6e-61 240.0 198 56.6
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.6e-61 240.0 198 57.1
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.6e-61 240.0 200 58.5
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.7e-61 239.2 198 58.6
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 3.5e-61 238.8 198 56.6
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 6.0e-61 238.0 198 57.6
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 7.8e-61 237.7 198 57.1
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.3e-60 236.9 198 56.6
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.7e-60 236.5 198 57.6
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 2.3e-60 236.1 198 55.1
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 3.9e-60 235.3 216 53.7
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 5.1e-60 235.0 219 53.0
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 5.1e-60 235.0 198 57.1
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 6.6e-60 234.6 198 57.6
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 6.6e-60 234.6 199 59.8
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 6.6e-60 234.6 198 57.6
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 6.6e-60 234.6 198 57.1
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 8.7e-60 234.2 198 56.6
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.5e-59 233.4 198 55.1
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.9e-59 233.0 198 54.0
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.9e-59 233.0 198 57.1
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.5e-59 232.6 198 57.1
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 3.3e-59 232.3 198 56.6
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 9.6e-59 230.7 198 56.6
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-58 230.3 197 54.8
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.1e-58 229.6 216 52.8
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 2.8e-58 229.2 198 56.6
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.8e-58 229.2 234 50.9
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 3.6e-58 228.8 198 55.1
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.6e-58 228.8 234 50.9
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 4.8e-58 228.4 198 55.6
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 6.2e-58 228.0 198 54.5
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 5.3e-57 224.9 169 62.1
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.0e-57 224.2 206 53.9
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.2e-56 223.8 172 61.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.6e-56 222.6 170 62.9
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 5.8e-56 221.5 206 52.4
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 9.9e-56 220.7 236 48.3
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.9e-55 219.2 188 58.5
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 3.8e-55 218.8 180 57.2
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.8e-55 218.8 198 53.0
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 3.8e-55 218.8 174 60.9
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 2.1e-53 213.0 253 45.1
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 6.0e-53 211.5 171 56.7
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.8e-52 209.9 198 53.0
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 2.3e-52 209.5 199 51.3
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 2.8e-50 202.6 190 54.7
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 3.1e-49 199.1 198 46.5
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.6e-48 196.1 198 52.0
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 3.8e-47 192.2 159 58.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 5.5e-46 188.3 196 46.9
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 9.3e-46 187.6 155 56.8
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 7.9e-45 184.5 197 47.2
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.3e-44 183.0 198 49.0
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 4.3e-43 178.7 160 53.1
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 5.7e-43 178.3 142 61.3
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 2.8e-42 176.0 145 57.9
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 4.8e-42 175.3 135 62.2
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 4.2e-38 162.2 165 49.1
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.1e-37 159.8 129 58.9
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 7.9e-37 157.9 152 48.7
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.6e-32 142.9 120 55.0
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 4.5e-32 142.1 130 51.5
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 6.5e-31 138.3 143 49.7
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.4e-30 137.1 114 53.5
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 7.2e-30 134.8 142 48.6
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.2e-29 134.0 110 60.9
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.6e-29 133.7 113 47.8
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.7e-29 132.9 113 46.9
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 1.0e-28 131.0 114 54.4
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 3.0e-28 129.4 185 40.0
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 1.7e-26 123.6 141 42.6
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 6.9e-25 118.2 85 60.0
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 7.7e-24 114.8 97 60.8
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 2.9e-23 112.8 77 71.4
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.6e-21 107.1 77 67.5
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 7.9e-21 104.8 77 67.5
MCO15G520 Micromonas commoda HOM05D004322 ORTHO05D005033 1.0e-20 104.4 190 32.6
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.0e-20 104.4 77 67.5
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 1.4e-20 104.0 114 49.1
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 8.8e-20 101.3 77 62.3
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.5e-19 100.5 77 63.6
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.5e-19 100.5 77 63.6
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.5e-19 100.5 83 59.0
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.7e-18 97.1 77 62.3
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.2e-18 96.7 77 59.7
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.4e-17 94.0 71 63.4
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.0e-16 90.1 72 61.1
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.0e-15 87.8 75 56.0
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 2.2e-15 86.7 119 40.3
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 8.5e-15 84.7 59 59.3
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 3.9e-12 75.9 145 37.2
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 8.8e-12 74.7 61 60.7
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 2.0e-11 73.6 67 49.3
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.3e-11 72.8 100 39.0
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.8e-10 69.7 54 55.6
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 8.2e-10 68.2 61 52.5
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 3.1e-09 66.2 55 54.5
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.6e-08 63.2 57 50.9
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 7.7e-08 61.6 55 49.1
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 7.7e-08 61.6 45 57.8
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 1.7e-07 60.5 57 50.9
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.9e-06 57.0 45 62.2
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 3.2e-06 56.2 54 50.0
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 3.2e-06 56.2 55 47.3
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 4.2e-06 55.8 44 61.4


User provided reference genes

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