Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0416900 Oryza sativa ssp. japonica HOM05D002079 ORTHO05D014284 3.6e-41 171.0 78 100.0
Zm00001eb083520 Zea mays HOM05D002079 ORTHO05D002437 1.6e-36 155.6 78 88.5
MBI17_g28778_MAGBIO Magnolia biondii HOM05D002079 ORTHO05D002437 6.5e-27 123.6 68 79.4
Manes.08G033700 Manihot esculenta HOM05D002079 ORTHO05D002437 3.2e-26 121.3 77 70.1
Gohir.D01G191200 Gossypium hirsutum HOM05D002079 ORTHO05D002437 5.5e-26 120.6 67 76.1
Gorai.002G235100 Gossypium raimondii HOM05D002079 ORTHO05D002437 5.5e-26 120.6 67 76.1
Os02g0539100 Oryza sativa ssp. japonica HOM05D002079 ORTHO05D002437 5.5e-26 120.6 70 75.7
Gohir.A01G201300 Gossypium hirsutum HOM05D002079 ORTHO05D002437 7.2e-26 120.2 67 76.1
Cpa.g.sc104.29 Carica papaya HOM05D002079 ORTHO05D014284 9.4e-26 119.8 67 76.1
Ciclev10011110m.g Citrus clementina HOM05D002079 ORTHO05D002437 9.4e-26 119.8 76 72.4
Zm00001eb243060 Zea mays HOM05D002079 ORTHO05D002437 9.4e-26 119.8 75 72.0
HPP92_004396 Vanilla planifolia HOM05D002079 ORTHO05D002437 1.2e-25 119.4 66 75.8
Lalb_Chr25g0287991 Lupinus albus HOM05D002079 ORTHO05D002437 1.6e-25 119.0 70 70.0
QL07p036689 Quercus lobata HOM05D002079 ORTHO05D002437 1.6e-25 119.0 69 72.5
Hma1.2p1_0079F.1_g041820 Hydrangea macrophylla HOM05D002079 ORTHO05D002437 2.1e-25 118.6 71 70.4
Potri.016G070200 Populus trichocarpa HOM05D002079 ORTHO05D002437 2.1e-25 118.6 81 66.7
Glyma.19G200000 Glycine max HOM05D002079 ORTHO05D002437 2.7e-25 118.2 79 67.1
MD12G1040400 Malus domestica HOM05D002079 ORTHO05D002437 2.7e-25 118.2 78 64.1
Sabra06G0156400 Salix brachista HOM05D002079 ORTHO05D002437 2.7e-25 118.2 67 73.1
arahy.Tifrunner.gnm1.ann1.6KTC2K Arachis hypogaea HOM05D002079 ORTHO05D002437 3.6e-25 117.9 78 67.9
arahy.Tifrunner.gnm1.ann1.BGF2TK Arachis hypogaea HOM05D002079 ORTHO05D002437 3.6e-25 117.9 78 67.9
Lj1g0024724 Lotus japonicus HOM05D002079 ORTHO05D002437 4.7e-25 117.5 78 65.4
Cfa020030 Carpinus fangiana HOM05D002079 ORTHO05D002437 6.1e-25 117.1 76 69.7
Potri.006G203200 Populus trichocarpa HOM05D002079 ORTHO05D002437 6.1e-25 117.1 67 73.1
Sabra16G0070500 Salix brachista HOM05D002079 ORTHO05D002437 6.1e-25 117.1 61 80.3
Sabra16G0072600 Salix brachista HOM05D002079 ORTHO05D002437 6.1e-25 117.1 61 80.3
VMungo1383G0583 Vigna mungo HOM05D002079 ORTHO05D002437 6.1e-25 117.1 71 71.8
Atru.chr8.1358 Acer truncatum HOM05D002079 ORTHO05D014284 8.0e-25 116.7 67 71.6
MSTRG.19308 Avicennia marina HOM05D002079 ORTHO05D002437 8.0e-25 116.7 72 69.4
CANSAT64G0572 Cannabis sativa HOM05D002079 ORTHO05D002437 8.0e-25 116.7 61 80.3
CiPaw.10G017700 Carya illinoinensis HOM05D002079 ORTHO05D002437 8.0e-25 116.7 82 63.4
Lalb_Chr20g0111361 Lupinus albus HOM05D002079 ORTHO05D002437 8.0e-25 116.7 78 62.8
TAR623G0108 Trochodendron aralioides HOM05D002079 ORTHO05D002437 8.0e-25 116.7 68 72.1
Aqoxy1G00656 Aquilegia oxysepala HOM05D002079 ORTHO05D002437 1.0e-24 116.3 71 66.2
RcHm_v2.0_Chr3g0475941 Rosa chinensis HOM05D002079 ORTHO05D002437 1.0e-24 116.3 78 66.7
Ca_09057_v3 Cicer arietinum L. HOM05D002079 ORTHO05D002437 1.4e-24 115.9 78 64.1
THA.LOC104816623 Tarenaya hassleriana HOM05D002079 ORTHO05D002437 1.4e-24 115.9 67 74.6
Thecc.05G104500 Theobroma cacao HOM05D002079 ORTHO05D002437 1.4e-24 115.9 67 73.1
TAR636G1759 Trochodendron aralioides HOM05D002079 ORTHO05D002437 1.4e-24 115.9 60 81.7
Phvul.001G195600 Phaseolus vulgaris HOM05D002079 ORTHO05D002437 1.8e-24 115.5 71 70.4
Prupe.7G094500 Prunus persica HOM05D002079 ORTHO05D002437 1.8e-24 115.5 78 64.1
Actinidia37747 Actinidia chinensis HOM05D002079 ORTHO05D002437 2.3e-24 115.2 67 71.6
CDE06G1521 Ceratophyllum demersum HOM05D002079 ORTHO05D002437 2.3e-24 115.2 68 72.1
Haze_20183 Corylus avellana HOM05D002079 ORTHO05D002437 2.3e-24 115.2 76 68.4
FvH4_6g20320 Fragaria vesca HOM05D002079 ORTHO05D002437 2.3e-24 115.2 72 69.4
FAN05G1251 Fragaria x ananassa HOM05D002079 ORTHO05D002437 2.3e-24 115.2 72 69.4
FAN05G5008 Fragaria x ananassa HOM05D002079 ORTHO05D002437 2.3e-24 115.2 72 69.4
FAN14G2006 Fragaria x ananassa HOM05D002079 ORTHO05D002437 2.3e-24 115.2 72 69.4
Sed0003834 Sechium edule HOM05D002079 ORTHO05D002437 2.3e-24 115.2 73 71.2
CSS0050433 Camellia sinensis var. sinensis HOM05D002079 ORTHO05D002437 3.0e-24 114.8 67 71.6
FAN09G3835 Fragaria x ananassa HOM05D002079 ORTHO05D002437 3.0e-24 114.8 72 69.4
Glyma.03G202100 Glycine max HOM05D002079 ORTHO05D002437 3.0e-24 114.8 71 69.0
CsaV3_6G041120 Cucumis sativus L. HOM05D002079 ORTHO05D002437 4.0e-24 114.4 70 71.4
Duzib106G1935 Durio zibethinus HOM05D002079 ORTHO05D002437 4.0e-24 114.4 67 73.1
MD14G1039100 Malus domestica HOM05D002079 ORTHO05D002437 4.0e-24 114.4 72 68.1
Migut.J00701 Erythranthe guttata HOM05D002079 ORTHO05D002437 6.8e-24 113.6 71 67.6
Ah.12g059240 Amaranthus hybridus HOM05D002079 ORTHO05D002437 8.8e-24 113.2 76 65.8
ClCG01G015020 Citrullus lanatus HOM05D002079 ORTHO05D002437 8.8e-24 113.2 73 71.2
Manes.09G045300 Manihot esculenta HOM05D002079 ORTHO05D002437 8.8e-24 113.2 67 71.6
Oeu028641.1 Olea europaea HOM05D002079 ORTHO05D002437 8.8e-24 113.2 78 66.7
TPR.G35560 Trifolium pratense HOM05D002079 ORTHO05D002437 8.8e-24 113.2 76 67.1
ATR0772G176 Amborella trichopoda HOM05D002079 ORTHO05D002437 1.2e-23 112.8 68 70.6
Cc06_g06570 Coffea canephora HOM05D002079 ORTHO05D002437 1.2e-23 112.8 78 65.4
Psat3g028880 Pisum sativum HOM05D002079 ORTHO05D002437 1.2e-23 112.8 71 67.6
Nn6g34687 Nelumbo nucifera HOM05D002079 ORTHO05D002437 1.5e-23 112.5 76 67.1
Lj5g0023694 Lotus japonicus HOM05D002079 ORTHO05D002437 2.0e-23 112.1 61 77.0
Sc22g0002880 Simmondsia chinensis HOM05D002079 ORTHO05D002437 2.0e-23 112.1 69 72.5
TWI74G0530 Tripterygium wilfordii HOM05D002079 ORTHO05D002437 2.0e-23 112.1 60 78.3
TWI77G0972 Tripterygium wilfordii HOM05D002079 ORTHO05D002437 2.0e-23 112.1 60 78.3
COL.COLO4_29572 Corchorus olitorius HOM05D002079 ORTHO05D002437 2.6e-23 111.7 67 70.1
MELO3C024587.2 Cucumis melo HOM05D002079 ORTHO05D002437 2.6e-23 111.7 73 69.9
FAN02G2352 Fragaria x ananassa HOM05D002079 ORTHO05D002437 2.6e-23 111.7 72 68.1
CAN.G574.15 Capsicum annuum HOM05D002079 ORTHO05D002437 3.4e-23 111.3 78 64.1
unitig_744.g24708 Utricularia gibba HOM05D002079 ORTHO05D002437 3.4e-23 111.3 74 68.9
Os11g0158400 Oryza sativa ssp. japonica HOM05D002079 ORTHO05D002437 4.4e-23 110.9 69 68.1
HanXRQChr11g0347041 Helianthus annuus HOM05D002079 ORTHO05D002437 5.7e-23 110.5 67 68.7
PSO339G0696 Papaver somniferum HOM05D002079 ORTHO05D002437 5.7e-23 110.5 70 67.1
Lalb_Chr02g0154451 Lupinus albus HOM05D002079 ORTHO05D002437 7.5e-23 110.2 61 73.8
Peaxi162Scf00086g01511 Petunia axillaris HOM05D002079 ORTHO05D002437 7.5e-23 110.2 73 67.1
ECA248G3162 Erigeron canadensis HOM05D002079 ORTHO05D002437 9.8e-23 109.8 80 60.0
Duzib093G1055 Durio zibethinus HOM05D002079 ORTHO05D002437 1.3e-22 109.4 67 68.7
Lj1C1053G4 Lonicera japonica HOM05D002079 ORTHO05D002437 1.3e-22 109.4 69 62.3
Medtr7g106250 Medicago truncatula HOM05D002079 ORTHO05D002437 1.3e-22 109.4 78 61.5
Peaxi162Scf00211g00058 Petunia axillaris HOM05D002079 ORTHO05D002437 1.3e-22 109.4 59 78.0
arahy.Tifrunner.gnm1.ann1.BQ87IR Arachis hypogaea HOM05D002079 ORTHO05D002437 1.7e-22 109.0 70 62.9
arahy.Tifrunner.gnm1.ann1.NCJ8FH Arachis hypogaea HOM05D002079 ORTHO05D002437 1.7e-22 109.0 70 62.9
CDE08G1621 Ceratophyllum demersum HOM05D002079 ORTHO05D002437 2.2e-22 108.6 66 71.2
Gohir.A11G315800 Gossypium hirsutum HOM05D002079 ORTHO05D002437 2.8e-22 108.2 59 76.3
PSO384G1841 Papaver somniferum HOM05D002079 ORTHO05D002437 2.8e-22 108.2 70 65.7
Hund10873 Selenicereus undatus HOM05D002079 ORTHO05D002437 4.9e-22 107.5 74 62.2
Thhalv10020090m.g Eutrema salsugineum HOM05D002079 ORTHO05D002437 6.3e-22 107.1 73 60.3
Sp3g09900 Schrenkiella parvula HOM05D002079 ORTHO05D002437 6.3e-22 107.1 73 60.3
Solyc10g081900.3 Solanum lycopersicum HOM05D002079 ORTHO05D002437 6.3e-22 107.1 71 64.8
Sopen10g032410 Solanum pennellii HOM05D002079 ORTHO05D002437 6.3e-22 107.1 71 64.8
PGSC0003DMG400028233 Solanum tuberosum HOM05D002079 ORTHO05D002437 6.3e-22 107.1 71 64.8
SGA_v2.0_scaffold13G06640 Striga asiatica HOM05D002079 ORTHO05D002437 6.3e-22 107.1 61 75.4
Ah.02g115430 Amaranthus hybridus HOM05D002079 ORTHO05D002437 8.3e-22 106.7 76 60.5
Medtr1g057700 Medicago truncatula HOM05D002079 ORTHO05D002437 8.3e-22 106.7 61 75.4
PGR004G0448 Punica granatum HOM05D002079 ORTHO05D002437 8.3e-22 106.7 74 64.9
Gohir.D11G333000 Gossypium hirsutum HOM05D002079 ORTHO05D002437 1.1e-21 106.3 59 74.6
Gorai.007G364000 Gossypium raimondii HOM05D002079 ORTHO05D002437 1.1e-21 106.3 59 74.6
SEGI_38652 Sequoiadendron giganteum HOM05D002079 ORTHO05D002437 1.1e-21 106.3 75 64.0
Zm00001eb202120 Zea mays HOM05D002079 ORTHO05D002437 1.1e-21 106.3 67 65.7
Aa31LG3G5090 Aethionema arabicum HOM05D002079 ORTHO05D002437 1.8e-21 105.5 71 63.4
Nitab4.5_0004452g0030 Nicotiana tabacum HOM05D002079 ORTHO05D002437 1.8e-21 105.5 61 68.9
CAN.G1245.1 Capsicum annuum HOM05D002079 ORTHO05D002437 3.1e-21 104.8 71 64.8
CARHR086220 Cardamine hirsuta HOM05D002079 ORTHO05D002437 3.1e-21 104.8 76 59.2
Nitab4.5_0002844g0060 Nicotiana tabacum HOM05D002079 ORTHO05D002437 3.1e-21 104.8 70 65.7
Nitab4.5_0005037g0010 Nicotiana tabacum HOM05D002079 ORTHO05D002437 3.1e-21 104.8 70 65.7
EL10Ac5g12969 Beta vulgaris HOM05D002079 ORTHO05D002437 4.1e-21 104.4 70 64.3
Eucgr.A02590 Eucalyptus grandis HOM05D002079 ORTHO05D002437 4.1e-21 104.4 61 70.5
Nitab4.5_0005513g0050 Nicotiana tabacum HOM05D002079 ORTHO05D002437 4.1e-21 104.4 72 65.3
vmacro07477 Vaccinium macrocarpon HOM05D002079 ORTHO05D002437 4.1e-21 104.4 67 67.2
Ah.12g059220 Amaranthus hybridus HOM05D002079 ORTHO05D002437 7.0e-21 103.6 77 62.3
Ca_11697_v3 Cicer arietinum L. HOM05D002079 ORTHO05D002437 7.0e-21 103.6 64 67.2
Sopen01g003080 Solanum pennellii HOM05D002079 ORTHO05D002437 7.0e-21 103.6 78 56.4
PGSC0003DMG400021322 Solanum tuberosum HOM05D002079 ORTHO05D002437 7.0e-21 103.6 78 57.7
AT3G11670 Arabidopsis thaliana HOM05D002079 ORTHO05D002437 2.7e-20 101.7 76 57.9
Lsat_1_v5_gn_1_58180 Lactuca sativa HOM05D002079 ORTHO05D002437 3.5e-20 101.3 65 66.2
Solyc01g007100.3 Solanum lycopersicum HOM05D002079 ORTHO05D002437 3.5e-20 101.3 78 55.1
AL3G23220 Arabidopsis lyrata HOM05D002079 ORTHO05D002437 5.9e-20 100.5 73 60.3
Rhsim03G0064600 Rhododendron simsii HOM05D002079 ORTHO05D002437 7.7e-20 100.1 67 62.7
BcaB06g25594 Brassica carinata HOM05D002079 ORTHO05D002437 1.0e-19 99.8 72 61.1
GSVIVG01011149001 Vitis vinifera HOM05D002079 ORTHO05D002437 1.3e-19 99.4 50 82.0
A05p37670 Brassica napus HOM05D002079 ORTHO05D002437 1.7e-19 99.0 75 58.7
C05p56250 Brassica napus HOM05D002079 ORTHO05D002437 1.7e-19 99.0 74 58.1
BolC5t34288H Brassica oleracea HOM05D002079 ORTHO05D002437 1.7e-19 99.0 74 58.1
Hund14952 Selenicereus undatus HOM05D002079 ORTHO05D002437 2.3e-19 98.6 67 64.2
BraA05t22563Z Brassica rapa HOM05D002079 ORTHO05D002437 2.9e-19 98.2 74 56.8
BcaC05g29343 Brassica carinata HOM05D002079 ORTHO05D002437 5.0e-19 97.4 74 58.1
Carub.0003s1099 Capsella rubella HOM05D002079 ORTHO05D002437 5.0e-19 97.4 68 58.8
DCAR_020702 Daucus carota HOM05D002079 ORTHO05D002437 2.5e-18 95.1 68 58.8
HanXRQChr13g0398391 Helianthus annuus HOM05D002079 ORTHO05D002437 3.3e-18 94.7 55 69.1
Actinidia03888 Actinidia chinensis HOM05D002079 ORTHO05D002437 5.5e-18 94.0 70 60.0
AUR62036377 Chenopodium quinoa HOM05D002079 ORTHO05D002437 1.6e-17 92.4 59 67.8
AUR62030739 Chenopodium quinoa HOM05D002079 ORTHO05D002437 3.6e-17 91.3 53 71.7
Psat4g115520 Pisum sativum HOM05D002079 ORTHO05D014284 6.3e-14 80.5 43 76.7
Mapoly0092s0015 Marchantia polymorpha HOM05D002079 ORTHO05D002437 3.5e-12 74.7 61 57.4
Psat2g085240 Pisum sativum HOM05D002079 ORTHO05D014284 3.5e-12 74.7 43 72.1
Psat2g085320 Pisum sativum HOM05D002079 ORTHO05D014284 3.5e-12 74.7 43 72.1
Pp3c23_20240 Physcomitrium patens HOM05D002079 ORTHO05D002437 1.0e-11 73.2 60 53.3
Psat7g011680 Pisum sativum HOM05D002079 ORTHO05D014284 1.0e-11 73.2 40 77.5
vmacro21497 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 1.7e-11 72.4 54 59.3
Psat5g263000 Pisum sativum HOM05D002079 ORTHO05D014284 8.6e-11 70.1 40 75.0
CBR_g40640 Chara braunii HOM05D002079 ORTHO05D002437 4.3e-10 67.8 59 49.2
Pp3c20_1800 Physcomitrium patens HOM05D002079 ORTHO05D002437 7.3e-10 67.0 60 50.0
Pp3c11_19410 Physcomitrium patens HOM05D002079 ORTHO05D002437 1.6e-09 65.9 85 41.2
Pp3c7_3610 Physcomitrium patens HOM05D002079 ORTHO05D002437 4.0e-08 61.2 86 39.5
Psat7g011600 Pisum sativum HOM05D002079 ORTHO05D014284 2.0e-07 58.9 40 65.0
SMO352G0057 Selaginella moellendorffii HOM05D002079 ORTHO05D002437 9.8e-07 56.6 71 45.1
SEGI_09524 Sequoiadendron giganteum HOM05D002079 ORTHO05D002437 2.2e-06 55.5 63 41.3


User provided reference genes

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