Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0409100 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 2.0e-256 888.6 462 100.0
Os07g0287000 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 1.3e-37 161.8 467 33.8
Zm00001eb305170 Zea mays HOM05D010914 ORTHO05D000221 2.5e-33 147.5 467 32.5
Os07g0285200 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 9.5e-33 145.6 475 30.3
Os02g0493100 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 1.2e-30 138.7 348 33.9
Os01g0596300 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 3.4e-30 137.1 477 28.7
Os04g0208500 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 2.2e-29 134.4 413 29.3
Os04g0208600 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 4.9e-29 133.3 408 31.1
Os01g0578500 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 6.4e-29 132.9 409 29.6
Os02g0178200 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 8.3e-29 132.5 430 31.2
Os07g0242700 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 6.0e-27 126.3 441 29.5
Os01g0595900 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 1.3e-26 125.2 409 31.1
Zm00001eb357650 Zea mays HOM05D000312 ORTHO05D000221 1.7e-26 124.8 415 29.9
Os04g0208400 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 1.1e-25 122.1 425 28.9
Os01g0598400 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 1.5e-25 121.7 462 28.4
Os07g0285700 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 4.3e-25 120.2 466 29.8
Os01g0730100 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 5.6e-25 119.8 464 29.5
Os01g0596100 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 1.2e-24 118.6 477 28.5
Os07g0276000 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 2.1e-24 117.9 360 31.9
Zm00001eb161220 Zea mays HOM05D000312 ORTHO05D000221 3.6e-24 117.1 411 27.7
Zm00001eb352290 Zea mays HOM05D010914 ORTHO05D012886 7.6e-22 109.4 444 29.7
Zm00001eb161230 Zea mays HOM05D000312 ORTHO05D000221 3.8e-21 107.1 348 29.6
Os01g0596700 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 4.9e-21 106.7 401 29.9
Os06g0492900 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D012886 1.4e-20 105.1 491 26.9
Os07g0285900 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D013480 9.2e-20 102.4 262 34.7
Os01g0730200 Oryza sativa ssp. japonica HOM05D000051 ORTHO05D000221 1.3e-18 98.6 292 32.9
Zm00001eb305100 Zea mays HOM05D010914 ORTHO05D012886 1.6e-16 91.7 485 26.8
Os07g0285450 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 2.8e-16 90.9 260 32.7
Zm00001eb305000 Zea mays HOM05D010914 ORTHO05D012886 2.8e-16 90.9 459 26.1
Os12g0496700 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 5.2e-15 86.7 486 27.0
Os01g0706266 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 3.8e-13 80.5 269 27.1
Zm00001eb305010 Zea mays HOM05D010914 ORTHO05D012886 1.1e-12 79.0 473 26.0
HanXRQChr12g0365181 Helianthus annuus HOM05D000312 ORTHO05D000221 3.5e-11 73.9 454 23.8
Atru.chr11.1487 Acer truncatum HOM05D000312 ORTHO05D000221 7.8e-11 72.8 450 25.3
TAR624G0688 Trochodendron aralioides HOM05D001396 ORTHO05D000493 1.0e-10 72.4 436 25.0
ECA233G4713 Erigeron canadensis HOM05D000312 ORTHO05D000221 1.3e-10 72.0 446 23.5
HanXRQChr08g0214711 Helianthus annuus HOM05D000312 ORTHO05D000221 3.0e-10 70.9 413 22.8
QL03p046814 Quercus lobata HOM05D000312 ORTHO05D000221 5.1e-10 70.1 446 24.9
Manes.14G093700 Manihot esculenta HOM05D000312 ORTHO05D000221 6.6e-10 69.7 449 24.7
MD16G1051800 Malus domestica HOM05D000312 ORTHO05D000221 1.5e-09 68.6 458 24.5
Os06g0492800 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D012886 1.5e-09 68.6 347 25.1
HanXRQChr08g0214721 Helianthus annuus HOM05D000312 ORTHO05D000221 2.5e-09 67.8 423 23.6
PGR102G1862 Punica granatum HOM05D000312 ORTHO05D000221 2.5e-09 67.8 472 24.4
PGR031G2522 Punica granatum HOM05D000312 ORTHO05D000221 3.3e-09 67.4 464 26.3
Peaxi162Scf00179g00923 Petunia axillaris HOM05D000312 ORTHO05D000221 4.3e-09 67.0 415 24.8
Prupe.1G299200 Prunus persica HOM05D000312 ORTHO05D000221 4.3e-09 67.0 444 24.5
Migut.L01460 Erythranthe guttata HOM05D000051 ORTHO05D001182 7.3e-09 66.2 327 26.6
Sc11g0002850 Simmondsia chinensis HOM05D000312 ORTHO05D000221 7.3e-09 66.2 406 23.9
BcaB02g06451 Brassica carinata HOM05D000312 ORTHO05D000221 1.3e-08 65.5 424 25.7
BraA06t24153Z Brassica rapa HOM05D000312 ORTHO05D000221 1.3e-08 65.5 417 25.9
BcaC05g25249 Brassica carinata HOM05D000312 ORTHO05D000221 2.8e-08 64.3 417 25.7
BolC5t29883H Brassica oleracea HOM05D000312 ORTHO05D000221 2.8e-08 64.3 417 25.7
HanXRQChr08g0214691 Helianthus annuus HOM05D000312 ORTHO05D000221 3.6e-08 63.9 456 23.0
Lj6A770T46 Lonicera japonica HOM05D000312 ORTHO05D000221 3.6e-08 63.9 449 23.2
Medtr2g047872 Medicago truncatula HOM05D000312 ORTHO05D000221 3.6e-08 63.9 459 23.1
Potri.010G134200 Populus trichocarpa HOM05D000312 ORTHO05D000221 3.6e-08 63.9 439 24.6
Rhsim09G0116800 Rhododendron simsii HOM05D000312 ORTHO05D000221 3.6e-08 63.9 461 23.0
Eucgr.A00477 Eucalyptus grandis HOM05D000312 ORTHO05D000221 4.8e-08 63.5 433 24.7
Lalb_Chr17g0341671 Lupinus albus HOM05D000312 ORTHO05D000221 4.8e-08 63.5 447 23.7
CARHR013890 Cardamine hirsuta HOM05D000312 ORTHO05D000221 2.4e-07 61.2 438 22.6
Ciclev10031638m.g Citrus clementina HOM05D000312 ORTHO05D000221 2.4e-07 61.2 444 23.2
Lsat_1_v5_gn_8_37720 Lactuca sativa HOM05D000312 ORTHO05D000221 2.4e-07 61.2 445 22.7
Manes.06G077200 Manihot esculenta HOM05D000312 ORTHO05D000221 2.4e-07 61.2 450 24.0
RcHm_v2.0_Chr4g0436781 Rosa chinensis HOM05D000312 ORTHO05D000221 2.4e-07 61.2 454 23.6
vmacro10487 Vaccinium macrocarpon HOM05D000312 ORTHO05D000221 2.4e-07 61.2 449 24.3
Hund05795 Selenicereus undatus HOM05D000312 ORTHO05D000221 3.1e-07 60.8 449 23.8
C09p73750 Brassica napus HOM05D002909 ORTHO05D000493 4.0e-07 60.5 233 28.8
BolC9t60108H Brassica oleracea HOM05D002909 ORTHO05D000493 4.0e-07 60.5 233 28.8
Thhalv10027555m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 4.0e-07 60.5 250 26.0
AT1G13570 Arabidopsis thaliana HOM05D000312 ORTHO05D000221 5.3e-07 60.1 436 22.2
Carub.0008s1390 Capsella rubella HOM05D000051 ORTHO05D000015 5.3e-07 60.1 363 26.7
MD13G1052800 Malus domestica HOM05D000312 ORTHO05D000221 5.3e-07 60.1 455 23.7
SGA_v2.0_scaffold3G01569 Striga asiatica HOM05D001396 ORTHO05D000493 5.3e-07 60.1 429 24.9
SGA_v2.0_scaffold835G53654 Striga asiatica HOM05D001396 ORTHO05D000493 5.3e-07 60.1 429 24.9
CsaV3_5G033690 Cucumis sativus L. HOM05D000312 ORTHO05D000221 6.9e-07 59.7 459 22.2
MBI19_g37318_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000221 9.0e-07 59.3 410 22.9
Os12g0557900 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 9.0e-07 59.3 167 32.3
AL1G25310 Arabidopsis lyrata HOM05D000312 ORTHO05D000221 1.2e-06 58.9 438 22.4
BcaC06g32021 Brassica carinata HOM05D002909 ORTHO05D000493 1.2e-06 58.9 233 29.2
A10p32850 Brassica napus HOM05D002909 ORTHO05D000493 1.2e-06 58.9 233 28.8
Carub.0001s1325 Capsella rubella HOM05D000312 ORTHO05D000221 1.2e-06 58.9 466 22.5
Peaxi162Scf00650g00351 Petunia axillaris HOM05D001396 ORTHO05D000493 1.2e-06 58.9 437 23.6
TAR371G0540 Trochodendron aralioides HOM05D000312 ORTHO05D000221 1.2e-06 58.9 443 24.4
ATR0584G137 Amborella trichopoda HOM05D000312 ORTHO05D000221 1.5e-06 58.5 237 27.0
ATR0584G249 Amborella trichopoda HOM05D000312 ORTHO05D000221 1.5e-06 58.5 210 27.1
CSS0001862 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 1.5e-06 58.5 461 22.3
Gohir.A13G095500 Gossypium hirsutum HOM05D000312 ORTHO05D000221 1.5e-06 58.5 447 23.3
TAR371G1213 Trochodendron aralioides HOM05D000312 ORTHO05D000221 1.5e-06 58.5 443 24.2
Atru.chr8.719 Acer truncatum HOM05D000312 ORTHO05D000221 2.0e-06 58.2 345 27.2
Solyc01g065840.4 Solanum lycopersicum HOM05D005268 ORTHO05D000493 2.0e-06 58.2 224 27.7
Sopen01g027240 Solanum pennellii HOM05D005268 ORTHO05D000493 2.0e-06 58.2 224 27.7
ATR0584G144 Amborella trichopoda HOM05D000312 ORTHO05D000221 2.6e-06 57.8 210 27.6
BcaNung04729 Brassica carinata HOM05D002909 ORTHO05D000493 2.6e-06 57.8 233 27.9
COL.COLO4_27737 Corchorus olitorius HOM05D000312 ORTHO05D000221 2.6e-06 57.8 448 22.5
Gohir.D13G089600 Gossypium hirsutum HOM05D000312 ORTHO05D000221 2.6e-06 57.8 446 22.2
Gorai.013G102700 Gossypium raimondii HOM05D000312 ORTHO05D000221 2.6e-06 57.8 447 23.3
Eucgr.E02620 Eucalyptus grandis HOM05D001396 ORTHO05D000493 3.4e-06 57.4 218 28.9
Manes.04G135400 Manihot esculenta HOM05D001477 ORTHO05D001182 3.4e-06 57.4 304 24.7
Os12g0558366 Oryza sativa ssp. japonica HOM05D010914 ORTHO05D012886 3.4e-06 57.4 327 26.0
BraA10t45322Z Brassica rapa HOM05D002909 ORTHO05D000493 4.5e-06 57.0 233 28.3
Nitab4.5_0001915g0040 Nicotiana tabacum HOM05D005268 ORTHO05D000493 4.5e-06 57.0 237 27.4
CSS0022857 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 5.8e-06 56.6 461 22.1
ATR0584G069 Amborella trichopoda HOM05D000312 ORTHO05D000221 7.6e-06 56.2 237 26.6
Nitab4.5_0001438g0180 Nicotiana tabacum HOM05D000312 ORTHO05D000221 7.6e-06 56.2 443 23.0
Os01g0596600 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 7.6e-06 56.2 242 26.4
Sabra10G0103100 Salix brachista HOM05D000312 ORTHO05D000221 7.6e-06 56.2 413 23.2
BcaB02g06452 Brassica carinata HOM05D000312 ORTHO05D000221 9.9e-06 55.8 373 24.4
CSS0004174 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 9.9e-06 55.8 461 23.0
CiPaw.05G118900 Carya illinoinensis HOM05D000312 ORTHO05D000221 9.9e-06 55.8 446 22.6
Os07g0229200 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 9.9e-06 55.8 266 27.8
Rhsim13G0198300 Rhododendron simsii HOM05D000051 ORTHO05D000015 9.9e-06 55.8 222 28.8
Thecc.02G317200 Theobroma cacao HOM05D000312 ORTHO05D000221 9.9e-06 55.8 446 23.1
TWI31G1454 Tripterygium wilfordii HOM05D000312 ORTHO05D000221 9.9e-06 55.8 423 23.9


User provided reference genes

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