Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 6.3e-51 204.5 169 100.0
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 7.0e-34 147.9 163 57.7
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 1.2e-22 110.5 138 68.8
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 4.1e-18 95.5 155 39.4
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 4.1e-18 95.5 158 43.7
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 5.4e-18 95.1 164 38.4
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.2e-17 94.0 168 40.5
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.6e-17 93.6 164 37.8
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.6e-17 93.6 164 37.8
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 4.6e-17 92.0 169 38.5
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 4.6e-17 92.0 175 45.1
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 7.8e-17 91.3 162 46.9
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 1.0e-16 90.9 166 49.4
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.3e-16 90.5 171 38.6
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 2.3e-16 89.7 169 37.9
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 2.3e-16 89.7 169 36.7
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 3.9e-16 89.0 169 40.8
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 3.9e-16 89.0 168 39.3
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 3.9e-16 89.0 161 37.9
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 5.1e-16 88.6 169 40.8
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 5.1e-16 88.6 169 40.8
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 6.6e-16 88.2 169 45.0
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.5e-15 87.0 165 39.4
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 1.9e-15 86.7 172 43.6
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.9e-15 86.7 166 37.3
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 1.9e-15 86.7 164 50.6
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 2.5e-15 86.3 161 47.2
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 3.3e-15 85.9 172 43.6
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 4.3e-15 85.5 167 35.9
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.3e-15 85.5 164 37.8
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 4.3e-15 85.5 166 36.1
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 4.3e-15 85.5 163 46.0
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 5.6e-15 85.1 167 38.9
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 7.3e-15 84.7 163 48.5
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 7.3e-15 84.7 163 48.5
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 1.2e-14 84.0 163 36.8
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.6e-14 83.6 163 41.1
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 1.6e-14 83.6 164 36.0
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.6e-14 83.6 163 37.4
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 1.6e-14 83.6 164 38.4
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.6e-14 83.6 169 35.5
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 2.1e-14 83.2 163 38.0
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 2.8e-14 82.8 164 37.8
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 2.8e-14 82.8 171 38.6
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 3.6e-14 82.4 163 50.9
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.7e-14 82.0 167 37.1
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 4.7e-14 82.0 175 53.1
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 6.2e-14 81.6 162 37.0
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 6.2e-14 81.6 165 41.2
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 8.1e-14 81.3 165 41.8
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 8.1e-14 81.3 167 38.9
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.1e-13 80.9 174 55.7
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 1.1e-13 80.9 169 37.3
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 1.1e-13 80.9 163 37.4
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 1.4e-13 80.5 169 51.5
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 1.4e-13 80.5 164 37.2
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 1.4e-13 80.5 163 38.7
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 1.8e-13 80.1 165 42.4
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.8e-13 80.1 163 37.4
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 2.3e-13 79.7 163 36.8
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 3.1e-13 79.3 167 40.7
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 4.0e-13 79.0 167 43.7
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 5.2e-13 78.6 155 36.8
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 6.8e-13 78.2 162 38.3
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 8.9e-13 77.8 166 36.7
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 1.2e-12 77.4 169 34.9
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 1.2e-12 77.4 163 40.5
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.5e-12 77.0 173 34.1
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.5e-12 77.0 166 37.3
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.5e-12 77.0 166 36.1
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 1.5e-12 77.0 162 56.2
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 1.5e-12 77.0 162 55.6
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 1.5e-12 77.0 169 34.9
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 2.0e-12 76.6 171 50.3
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 3.4e-12 75.9 165 35.8
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 4.4e-12 75.5 168 38.7
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 5.8e-12 75.1 167 40.1
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 7.5e-12 74.7 163 35.0
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.3e-11 73.9 155 35.5
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.3e-11 73.9 163 49.7
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 1.3e-11 73.9 179 48.0
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 1.3e-11 73.9 163 42.3
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 2.2e-11 73.2 170 37.6
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 2.9e-11 72.8 170 54.7
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 4.9e-11 72.0 167 33.5
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 8.3e-11 71.2 155 34.8
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 8.3e-11 71.2 155 34.2
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 8.3e-11 71.2 167 36.5
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 8.3e-11 71.2 175 39.4
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.1e-10 70.9 128 36.7
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 1.1e-10 70.9 163 56.4
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 1.4e-10 70.5 171 33.3
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 1.4e-10 70.5 166 44.6
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 2.4e-10 69.7 128 53.1
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 3.2e-10 69.3 172 32.6
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 3.2e-10 69.3 172 53.5
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 3.2e-10 69.3 191 42.4
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 5.4e-10 68.6 163 38.0
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 7.1e-10 68.2 163 38.0
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 7.1e-10 68.2 164 32.9
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 7.1e-10 68.2 160 43.8
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 7.1e-10 68.2 143 35.7
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 9.2e-10 67.8 167 34.1
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 9.2e-10 67.8 164 32.9
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 1.6e-09 67.0 163 39.9
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.6e-09 67.0 167 34.7
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.6e-09 67.0 168 32.7
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.6e-09 67.0 168 32.7
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 2.1e-09 66.6 147 34.7
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.3e-08 63.9 160 40.0
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.3e-08 63.9 130 43.8
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 5.1e-08 62.0 155 51.6
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 5.1e-08 62.0 169 31.4
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 8.6e-08 61.2 166 47.0
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 1.5e-07 60.5 213 40.4
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 1.5e-07 60.5 213 40.4
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 2.5e-07 59.7 163 48.5
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 4.3e-07 58.9 79 45.6
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.6e-06 57.0 43 60.5


User provided reference genes

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