Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0386300 Oryza sativa ssp. japonica HOM05D005335 ORTHO05D006472 1.5e-42 176.4 136 100.0
Zm00001eb085520 Zea mays HOM05D005335 ORTHO05D006472 1.8e-16 89.7 95 75.8
Zm00001eb241740 Zea mays HOM05D005335 ORTHO05D006472 3.2e-13 79.0 94 70.2
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 3.7e-09 65.5 95 41.1
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 4.8e-09 65.1 93 55.9
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 3.1e-08 62.4 91 57.1
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 4.1e-08 62.0 93 38.7
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 4.1e-08 62.0 93 38.7
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 4.1e-08 62.0 93 38.7
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 4.1e-08 62.0 93 38.7
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 4.1e-08 62.0 93 38.7
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 4.1e-08 62.0 93 38.7
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 9.1e-08 60.8 93 37.6
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 1.2e-07 60.5 93 37.6
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.2e-07 60.5 93 37.6
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.2e-07 60.5 93 37.6
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.2e-07 60.5 93 37.6
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.2e-07 60.5 93 37.6
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 1.5e-07 60.1 94 37.2
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 2.0e-07 59.7 93 37.6
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 2.0e-07 59.7 93 37.6
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 3.4e-07 58.9 93 52.7
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 3.4e-07 58.9 93 36.6
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 5.9e-07 58.2 92 35.9
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 5.9e-07 58.2 93 38.7
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 5.9e-07 58.2 93 35.5
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 7.7e-07 57.8 93 36.6
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 7.7e-07 57.8 93 35.5
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 7.7e-07 57.8 93 35.5
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.3e-06 57.0 93 39.8
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 1.7e-06 56.6 92 47.8
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 2.9e-06 55.8 93 34.4
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 2.9e-06 55.8 92 34.8
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.8e-06 55.5 93 43.0
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.0e-06 55.1 93 32.3
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.5e-06 54.7 94 33.0
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 6.5e-06 54.7 90 58.9
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 8.5e-06 54.3 93 33.3


User provided reference genes

Program Settings