Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 6.5e-77 290.8 164 100.0
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 1.9e-52 209.5 113 92.0
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 3.5e-46 188.7 138 69.6
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 7.8e-46 187.6 140 67.9
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 1.0e-45 187.2 138 71.0
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.3e-45 186.8 129 72.1
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 1.7e-45 186.4 141 69.5
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 2.3e-45 186.0 104 82.7
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 2.3e-45 186.0 104 82.7
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 2.3e-45 186.0 134 71.6
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 2.3e-45 186.0 104 81.7
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 2.9e-45 185.7 129 71.3
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 3.8e-45 185.3 133 71.4
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 6.6e-45 184.5 104 80.8
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 6.6e-45 184.5 132 70.5
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.1e-44 183.7 129 69.0
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 1.5e-44 183.3 129 69.8
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.5e-44 183.3 104 79.8
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 2.5e-44 182.6 131 70.2
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 2.5e-44 182.6 131 70.2
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 4.3e-44 181.8 144 68.1
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 4.3e-44 181.8 101 81.2
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 5.6e-44 181.4 144 68.8
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 5.6e-44 181.4 144 68.8
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 5.6e-44 181.4 144 66.7
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 5.6e-44 181.4 125 72.0
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 7.3e-44 181.0 135 68.1
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 7.3e-44 181.0 101 82.2
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 7.3e-44 181.0 131 68.7
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 7.3e-44 181.0 135 68.1
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 9.5e-44 180.6 125 71.2
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 9.5e-44 180.6 126 72.2
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 9.5e-44 180.6 131 67.9
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 1.2e-43 180.3 144 67.4
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 1.2e-43 180.3 144 67.4
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 1.2e-43 180.3 144 67.4
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.2e-43 180.3 157 63.7
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 2.1e-43 179.5 139 67.6
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 2.1e-43 179.5 126 69.8
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.1e-43 179.5 139 69.8
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 2.1e-43 179.5 126 68.3
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 2.8e-43 179.1 133 71.4
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 2.8e-43 179.1 100 80.0
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.8e-43 179.1 126 68.3
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 2.8e-43 179.1 128 73.4
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 3.6e-43 178.7 115 78.3
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 3.6e-43 178.7 128 72.7
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 4.7e-43 178.3 133 67.7
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 4.7e-43 178.3 135 67.4
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 6.1e-43 177.9 126 67.5
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 6.1e-43 177.9 111 73.9
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 8.0e-43 177.6 127 71.7
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 8.0e-43 177.6 139 64.0
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 8.0e-43 177.6 139 63.3
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 8.0e-43 177.6 136 68.4
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 1.0e-42 177.2 130 68.5
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 1.0e-42 177.2 103 77.7
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 1.4e-42 176.8 140 66.4
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.8e-42 176.4 130 70.8
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.8e-42 176.4 127 71.7
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 1.8e-42 176.4 137 67.2
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 2.3e-42 176.0 122 73.0
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 2.3e-42 176.0 137 67.9
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 3.0e-42 175.6 120 71.7
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 4.0e-42 175.3 131 67.2
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 4.0e-42 175.3 139 62.6
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 4.0e-42 175.3 139 64.7
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 5.2e-42 174.9 140 62.9
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 6.8e-42 174.5 104 76.9
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 8.9e-42 174.1 139 61.9
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 8.9e-42 174.1 137 66.4
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.2e-41 173.7 142 65.5
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 2.0e-41 172.9 133 67.7
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.0e-41 172.9 139 66.2
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.0e-41 172.9 139 64.7
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 2.6e-41 172.6 126 65.9
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.4e-41 172.2 139 65.5
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 5.8e-41 171.4 149 63.1
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 7.5e-41 171.0 96 80.2
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 9.8e-41 170.6 106 73.6
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 2.2e-40 169.5 141 62.4
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 6.4e-40 167.9 121 69.4
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 1.8e-39 166.4 102 76.5
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 2.4e-39 166.0 107 71.0
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 2.5e-36 156.0 83 85.5
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 9.5e-36 154.1 126 61.1
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 8.9e-34 147.5 98 73.5
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 2.0e-33 146.4 134 60.4
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 7.5e-33 144.4 104 69.2
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.3e-32 143.7 79 82.3
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 8.3e-32 141.0 118 60.2
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 5.4e-31 138.3 104 65.4
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 2.1e-30 136.3 70 82.9
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 3.9e-29 132.1 96 66.7
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 6.6e-29 131.3 73 78.1
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 4.3e-28 128.6 97 64.9
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.1e-26 124.0 95 58.9
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 5.2e-26 121.7 119 52.9
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 4.4e-25 118.6 137 51.1
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 6.4e-24 114.8 95 53.7
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.1e-23 114.0 126 50.0
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 5.4e-23 111.7 158 44.3
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 1.5e-20 103.6 56 83.9
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 4.7e-19 98.6 131 40.5
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 8.1e-19 97.8 53 86.8
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 2.4e-18 96.3 49 79.6
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 1.5e-17 93.6 57 68.4
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 5.8e-17 91.7 52 78.8
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 7.6e-17 91.3 81 53.1
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 5.4e-15 85.1 79 57.0
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 1.6e-14 83.6 72 61.1
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-14 82.8 52 69.2
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 3.5e-14 82.4 51 68.6
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 4.6e-14 82.0 77 58.4
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 6.0e-14 81.6 69 59.4
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 6.0e-14 81.6 69 59.4
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 6.0e-14 81.6 69 59.4
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 6.0e-14 81.6 69 59.4
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 7.8e-14 81.3 109 47.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.0e-13 80.9 139 38.8
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 5.8e-09 65.1 50 66.0
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 9.3e-07 57.8 40 70.0
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 3.5e-06 55.8 39 71.8
arahy.Tifrunner.gnm1.ann1.6D2PAS Arachis hypogaea HOM05D005851 ORTHO05D007137 3.5e-06 55.8 38 73.7
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 3.5e-06 55.8 39 71.8
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 3.5e-06 55.8 39 71.8
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 3.5e-06 55.8 39 71.8


User provided reference genes

Program Settings