Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 5.4e-198 694.1 348 100.0
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.7e-183 646.0 348 93.4
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.4e-166 589.7 334 86.8
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 7.9e-165 583.9 348 83.3
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.0e-164 583.6 348 82.2
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 6.7e-164 580.9 334 84.7
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.1e-163 580.1 335 84.5
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 2.5e-163 578.9 335 84.2
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 3.3e-163 578.6 335 83.9
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 4.3e-163 578.2 348 82.2
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 5.7e-163 577.8 348 81.9
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 5.7e-163 577.8 348 81.9
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 9.6e-163 577.0 335 83.9
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 9.6e-163 577.0 334 84.1
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.3e-162 576.6 335 83.9
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.3e-162 576.6 335 83.6
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 2.8e-162 575.5 335 83.9
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.8e-162 575.5 335 83.9
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 2.8e-162 575.5 336 83.0
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.8e-162 575.5 339 83.2
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 6.2e-162 574.3 335 83.9
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 6.2e-162 574.3 334 83.5
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 6.2e-162 574.3 348 82.5
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 6.2e-162 574.3 334 83.5
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 8.2e-162 573.9 338 82.0
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 8.2e-162 573.9 334 83.5
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.1e-161 573.5 334 83.2
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.1e-161 573.5 344 81.4
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 1.1e-161 573.5 333 83.2
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.8e-161 572.8 335 83.0
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.8e-161 572.8 335 83.0
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.8e-161 572.8 335 83.0
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.8e-161 572.8 348 82.2
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.8e-161 572.8 335 83.0
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.8e-161 572.8 334 82.9
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.8e-161 572.8 340 82.1
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 2.4e-161 572.4 348 80.7
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 2.4e-161 572.4 348 80.5
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.4e-161 572.4 341 83.3
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 2.4e-161 572.4 334 84.1
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 3.1e-161 572.0 340 83.2
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 3.1e-161 572.0 335 82.7
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 4.1e-161 571.6 335 83.0
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 4.1e-161 571.6 335 83.3
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 4.1e-161 571.6 335 82.7
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 5.3e-161 571.2 334 82.6
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 6.9e-161 570.9 334 82.6
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 6.9e-161 570.9 335 82.7
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 9.0e-161 570.5 335 83.9
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 9.0e-161 570.5 348 80.2
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 9.0e-161 570.5 334 83.5
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.2e-160 570.1 334 82.3
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 1.5e-160 569.7 333 82.6
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.0e-160 569.3 348 80.7
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.6e-160 568.9 348 79.9
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 3.4e-160 568.5 348 80.7
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.4e-160 568.5 334 81.7
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 5.8e-160 567.8 335 81.8
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 5.8e-160 567.8 333 82.3
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.2e-159 565.8 335 81.5
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 2.9e-159 565.5 332 82.5
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.9e-159 565.5 335 81.8
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 5.0e-159 564.7 335 81.8
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 5.0e-159 564.7 335 81.8
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 8.4e-159 563.9 335 81.2
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 8.4e-159 563.9 334 81.4
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 1.4e-158 563.1 335 81.8
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.9e-158 562.8 341 80.4
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.9e-158 562.8 341 80.4
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 3.2e-158 562.0 335 81.2
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 4.2e-158 561.6 341 80.1
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 5.5e-158 561.2 335 81.2
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 1.2e-157 560.1 346 80.1
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.3e-156 556.6 335 81.8
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.3e-156 556.6 339 79.9
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.3e-156 555.8 346 78.9
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.3e-156 555.8 337 80.1
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.3e-156 555.8 337 80.1
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.3e-156 555.8 317 85.2
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 3.0e-156 555.4 338 80.8
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 3.9e-156 555.1 335 81.5
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 6.7e-156 554.3 335 81.2
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 6.7e-156 554.3 335 81.2
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 6.7e-156 554.3 335 81.2
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.7e-156 554.3 337 79.8
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 8.7e-156 553.9 335 80.9
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.1e-155 553.5 335 81.2
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.1e-155 553.5 335 79.1
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.1e-155 553.5 335 80.0
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.5e-155 553.1 335 80.9
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 1.5e-155 553.1 335 80.9
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 1.9e-155 552.7 335 80.9
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 2.5e-155 552.4 335 80.9
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 3.3e-155 552.0 335 80.6
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 4.3e-155 551.6 335 80.3
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 5.7e-155 551.2 335 80.9
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.3e-154 550.1 335 80.6
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.6e-154 549.7 319 83.7
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.6e-154 549.7 338 79.0
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 2.2e-154 549.3 335 80.6
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 2.2e-154 549.3 338 80.2
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.8e-154 548.9 355 76.9
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.7e-154 548.5 336 78.9
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.4e-153 546.6 335 80.6
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 1.2e-152 543.5 309 83.5
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 1.5e-152 543.1 350 77.4
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.0e-152 542.7 330 80.3
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 4.5e-152 541.6 325 81.8
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 5.9e-152 541.2 346 77.5
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 3.8e-151 538.5 309 83.5
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.1e-150 537.0 374 71.9
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 2.5e-150 535.8 320 80.9
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 7.2e-150 534.3 325 79.7
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 3.0e-148 528.9 335 79.1
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.0e-148 528.9 318 80.5
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.5e-147 526.6 305 82.6
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.3e-146 523.5 316 81.0
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.3e-146 523.5 341 75.1
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.4e-145 520.0 341 75.7
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.4e-145 520.0 336 74.7
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 2.4e-145 519.2 341 73.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 6.9e-145 517.7 334 73.7
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.9e-143 512.3 336 74.1
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 5.5e-142 508.1 333 76.6
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.6e-141 506.5 377 70.3
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 4.4e-139 498.4 420 63.6
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 6.3e-138 494.6 364 71.2
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 4.5e-136 488.4 251 96.0
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.2e-133 480.3 323 71.5
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.7e-133 479.2 290 80.3
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.4e-132 476.9 348 72.4
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 4.0e-132 475.3 271 85.2
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 1.2e-128 463.8 265 85.3
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 7.7e-128 461.1 265 85.3
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 7.7e-128 461.1 265 85.3
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.2e-119 433.0 336 67.9
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 4.2e-118 428.7 333 66.7
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.6e-117 425.6 343 63.6
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.7e-114 416.8 334 60.2
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 3.7e-114 415.6 238 84.0
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.2e-106 389.8 251 76.1
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 7.0e-105 384.8 325 57.5
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.5e-102 377.1 243 75.3
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 9.5e-102 374.4 329 57.8
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 3.6e-101 372.5 216 82.9
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 1.6e-53 214.2 132 80.3
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.3e-41 171.8 165 57.0
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.4e-33 147.9 183 51.9
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 9.1e-28 128.6 79 75.9
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.7e-26 124.4 79 72.2
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 8.5e-26 122.1 73 79.5
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 2.1e-24 117.5 72 75.0
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.8e-18 96.7 77 61.0
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.5e-14 84.7 51 78.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.0e-11 74.3 61 65.6
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 1.3e-10 71.6 68 54.4
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 3.8e-10 70.1 118 39.8
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 5.0e-10 69.7 57 64.9
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 5.2e-07 59.7 60 53.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 5.2e-07 59.7 60 53.3


User provided reference genes

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