Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.8e-224 782.3 411 100.0
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 6.8e-99 365.2 351 58.7
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 4.6e-55 219.5 407 37.1
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 6.7e-54 215.7 306 43.8
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 1.9e-53 214.2 275 49.1
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 3.3e-53 213.4 412 36.2
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 1.6e-52 211.1 316 44.3
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 6.2e-52 209.1 296 43.2
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.4e-51 208.0 296 43.2
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 2.4e-51 207.2 296 42.9
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 5.3e-51 206.1 402 38.3
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 9.0e-51 205.3 286 42.0
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 1.2e-50 204.9 434 37.1
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 1.5e-50 204.5 440 36.8
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 1.5e-50 204.5 300 43.0
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 2.6e-50 203.8 378 37.0
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 3.4e-50 203.4 411 35.8
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.4e-50 203.4 289 45.7
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 7.6e-50 202.2 385 37.9
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.0e-49 201.8 288 43.8
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 1.0e-49 201.8 285 43.9
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 2.2e-49 200.7 454 34.1
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 2.2e-49 200.7 323 41.5
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 3.8e-49 199.9 446 34.5
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 4.9e-49 199.5 398 37.4
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 6.5e-49 199.1 434 36.9
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 6.5e-49 199.1 443 35.4
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 1.1e-48 198.4 433 36.7
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 1.9e-48 197.6 287 44.6
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 1.9e-48 197.6 445 36.2
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 2.5e-48 197.2 370 36.5
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 3.2e-48 196.8 395 35.7
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 4.2e-48 196.4 267 43.8
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 4.2e-48 196.4 445 36.0
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 5.5e-48 196.1 286 42.0
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 5.5e-48 196.1 299 40.5
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 5.5e-48 196.1 380 36.1
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.5e-48 196.1 438 36.3
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 5.5e-48 196.1 429 35.4
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 5.5e-48 196.1 403 37.2
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 7.1e-48 195.7 267 43.4
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 9.3e-48 195.3 266 43.6
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 1.6e-47 194.5 303 40.6
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 2.7e-47 193.7 298 41.9
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 1.0e-46 191.8 326 41.4
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 3.0e-46 190.3 294 42.5
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.7e-46 189.1 438 35.6
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 6.7e-46 189.1 407 36.4
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 8.7e-46 188.7 265 43.4
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 8.7e-46 188.7 429 35.2
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.1e-45 188.3 438 35.6
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 1.1e-45 188.3 445 33.0
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 1.9e-45 187.6 442 34.8
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.5e-45 187.2 351 37.3
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.5e-45 187.2 351 37.3
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 2.5e-45 187.2 413 34.9
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 4.3e-45 186.4 433 37.6
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 7.4e-45 185.7 381 36.7
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.7e-44 183.3 438 34.9
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 3.7e-44 183.3 355 39.2
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.1e-43 181.8 487 32.0
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 1.1e-43 181.8 434 33.2
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 3.1e-43 180.3 422 34.4
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 4.1e-43 179.9 381 35.2
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 5.3e-43 179.5 416 34.1
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 6.9e-43 179.1 445 35.3
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 6.9e-43 179.1 275 44.0
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.5e-42 177.9 423 37.1
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 2.6e-42 177.2 409 34.0
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 4.5e-42 176.4 424 32.8
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 5.9e-42 176.0 308 36.4
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 5.9e-42 176.0 438 36.1
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 7.6e-42 175.6 385 34.8
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.7e-41 174.5 428 34.8
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 6.5e-41 172.6 233 46.4
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 1.1e-40 171.8 438 35.8
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 5.5e-40 169.5 392 31.6
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 7.2e-40 169.1 247 42.5
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.1e-39 167.5 310 36.1
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 2.1e-39 167.5 407 31.0
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 4.6e-39 166.4 275 41.5
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 6.7e-38 162.5 479 31.1
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 1.3e-36 158.3 343 34.7
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 6.3e-36 156.0 379 33.5
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 6.3e-36 156.0 379 33.5
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 8.2e-36 155.6 394 32.7
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.4e-35 154.8 291 39.9
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 1.5e-34 151.4 276 38.8
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 8.5e-33 145.6 393 32.1
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 8.5e-33 145.6 244 39.8
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.9e-32 144.4 254 42.9
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 3.2e-32 143.7 279 34.8
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 5.5e-32 142.9 142 52.1
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 7.2e-32 142.5 550 28.5
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 3.3e-29 133.7 339 32.7
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 2.8e-28 130.6 249 39.0
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 3.7e-28 130.2 223 40.8
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 1.1e-27 128.6 129 54.3
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 6.5e-25 119.4 393 28.0
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 1.1e-24 118.6 260 32.7
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 7.2e-24 115.9 95 60.0
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 7.2e-24 115.9 324 32.4
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 6.1e-23 112.8 211 37.9
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 8.8e-22 109.0 83 61.4
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 1.3e-20 105.1 209 35.9
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.2e-17 94.4 184 38.6
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 2.9e-17 94.0 209 37.8
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 6.5e-17 92.8 104 47.1
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 2.1e-15 87.8 108 42.6
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 4.0e-14 83.6 160 38.8
CBR_g8884 Chara braunii HOM05D006063 ORTHO05D000023 5.9e-10 69.7 96 44.8
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 1.7e-09 68.2 49 69.4
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 1.0e-06 58.9 170 29.4


User provided reference genes

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