Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 4.2e-140 501.5 284 100.0
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 3.1e-82 309.3 259 66.8
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 2.4e-63 246.5 211 56.9
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 1.0e-61 241.1 211 55.9
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 3.9e-61 239.2 210 55.2
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 5.1e-61 238.8 202 56.4
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 1.1e-60 237.7 197 59.4
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 2.5e-60 236.5 199 58.8
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 4.3e-60 235.7 209 56.9
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 7.3e-60 235.0 281 48.4
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 9.6e-60 234.6 199 58.8
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 1.3e-59 234.2 210 54.8
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 1.6e-59 233.8 202 55.0
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 2.1e-59 233.4 199 58.8
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 2.1e-59 233.4 205 56.6
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 2.8e-59 233.0 216 54.2
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 2.8e-59 233.0 267 47.2
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 3.6e-59 232.6 199 58.3
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 8.1e-59 231.5 208 54.3
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.1e-58 231.1 201 56.2
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.1e-58 231.1 201 56.2
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 1.4e-58 230.7 262 50.4
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 1.8e-58 230.3 199 58.3
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 1.8e-58 230.3 199 58.3
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 2.4e-58 229.9 199 57.3
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 3.1e-58 229.6 209 55.5
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 3.1e-58 229.6 199 56.8
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 6.9e-58 228.4 198 57.6
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 9.0e-58 228.0 199 57.3
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 1.2e-57 227.6 200 54.0
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.2e-57 227.6 200 57.0
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.5e-57 227.3 245 48.2
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.5e-57 227.3 205 52.2
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 1.5e-57 227.3 216 54.6
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.5e-57 227.3 202 56.9
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 2.0e-57 226.9 201 53.7
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 4.4e-57 225.7 216 52.3
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 4.4e-57 225.7 201 53.2
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 7.6e-57 224.9 216 53.2
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 7.6e-57 224.9 214 52.3
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 7.6e-57 224.9 204 51.5
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 7.6e-57 224.9 203 56.2
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 9.9e-57 224.6 206 53.9
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 9.9e-57 224.6 214 50.0
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 9.9e-57 224.6 275 48.4
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 1.3e-56 224.2 216 53.2
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.7e-56 223.8 218 53.2
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 2.2e-56 223.4 201 55.7
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 2.2e-56 223.4 201 53.2
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 2.9e-56 223.0 216 52.8
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 3.8e-56 222.6 201 52.7
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 6.4e-56 221.9 224 50.0
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 8.4e-56 221.5 203 56.2
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 1.1e-55 221.1 214 54.7
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 1.9e-55 220.3 221 52.0
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 1.9e-55 220.3 210 52.4
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 2.4e-55 219.9 201 55.7
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 7.1e-55 218.4 222 50.5
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 9.3e-55 218.0 204 55.9
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 9.3e-55 218.0 220 50.5
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 9.3e-55 218.0 203 55.2
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 9.3e-55 218.0 203 53.7
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 9.3e-55 218.0 201 55.2
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 1.2e-54 217.6 204 53.4
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 1.6e-54 217.2 220 51.4
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 2.1e-54 216.9 201 53.2
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.1e-54 216.9 217 52.5
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.1e-54 216.9 189 58.2
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 2.1e-54 216.9 202 56.4
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 6.0e-54 215.3 209 50.2
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.0e-53 214.5 210 51.9
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 1.3e-53 214.2 202 53.0
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 1.5e-52 210.7 171 60.8
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 2.5e-52 209.9 216 50.5
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 4.3e-52 209.1 202 54.0
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 9.6e-52 208.0 218 49.5
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 9.6e-52 208.0 193 54.4
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 2.8e-51 206.5 212 50.5
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 3.6e-51 206.1 236 46.2
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 3.6e-51 206.1 197 52.3
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 5.3e-50 202.2 172 58.1
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 2.0e-49 200.3 209 47.4
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.6e-49 199.9 174 56.9
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 7.6e-49 198.4 170 59.4
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 7.6e-49 198.4 205 48.3
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 9.9e-49 198.0 192 52.1
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 3.8e-48 196.1 181 56.9
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 8.4e-48 194.9 211 49.8
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 1.1e-47 194.5 240 45.8
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 5.5e-47 192.2 192 50.5
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 7.1e-47 191.8 170 57.6
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 3.5e-46 189.5 172 57.0
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 3.5e-46 189.5 202 51.5
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 8.7e-45 184.9 203 51.2
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 2.1e-43 180.3 199 47.2
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 2.8e-43 179.9 183 53.6
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.4e-42 176.8 210 45.2
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 1.5e-41 174.1 200 46.0
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 1.2e-38 164.5 201 43.8
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 1.2e-38 164.5 162 52.5
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.4e-34 150.2 173 48.0
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 3.8e-32 142.9 204 40.2
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 3.2e-31 139.8 192 40.6
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.6e-30 137.5 134 55.2
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 2.2e-27 127.1 122 51.6
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 6.3e-27 125.6 118 53.4
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.1e-26 124.8 201 37.3
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.8e-26 124.0 228 39.0
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 9.0e-26 121.7 165 38.2
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 3.4e-25 119.8 92 62.0
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 7.7e-25 118.6 257 35.8
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 3.2e-23 113.2 128 45.3
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 4.2e-23 112.8 81 64.2
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 9.4e-23 111.7 81 64.2
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 1.6e-22 110.9 130 49.2
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 3.0e-21 106.7 81 60.5
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 8.8e-21 105.1 89 55.1
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.1e-20 104.8 171 37.4
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 2.4e-18 97.1 162 38.9
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 3.4e-17 93.2 95 47.4
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 1.2e-14 84.7 88 56.8
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 6.7e-13 79.0 135 38.5
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.6e-09 67.8 60 51.7
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 7.2e-07 58.9 51 56.9


User provided reference genes

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