Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0306750 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 9.2e-41 171.0 201 100.0
Zm00001eb375110 Zea mays HOM05D007425 ORTHO05D009334 7.3e-22 108.2 60 91.7
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 2.9e-18 96.3 60 80.0
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 4.9e-18 95.5 60 78.3
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 1.1e-17 94.4 60 76.7
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 1.4e-17 94.0 59 78.0
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 1.4e-17 94.0 59 78.0
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 1.9e-17 93.6 60 76.7
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 1.9e-17 93.6 59 78.0
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 1.9e-17 93.6 60 76.7
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 1.9e-17 93.6 60 76.7
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 2.4e-17 93.2 60 76.7
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 2.4e-17 93.2 60 76.7
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 2.4e-17 93.2 60 76.7
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 2.4e-17 93.2 60 75.0
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 3.2e-17 92.8 60 75.0
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 4.2e-17 92.4 60 75.0
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 4.2e-17 92.4 59 76.3
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 5.4e-17 92.0 59 76.3
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 7.1e-17 91.7 60 75.0
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 7.1e-17 91.7 60 73.3
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 9.3e-17 91.3 60 73.3
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 9.3e-17 91.3 59 76.3
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 9.3e-17 91.3 59 76.3
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 9.3e-17 91.3 59 76.3
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 9.3e-17 91.3 59 76.3
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 9.3e-17 91.3 59 76.3
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 1.2e-16 90.9 59 76.3
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 1.2e-16 90.9 60 73.3
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 1.2e-16 90.9 60 71.7
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 1.2e-16 90.9 60 73.3
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 1.2e-16 90.9 60 73.3
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 1.2e-16 90.9 60 73.3
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 1.6e-16 90.5 60 73.3
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 1.6e-16 90.5 60 73.3
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 2.1e-16 90.1 59 76.3
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 2.1e-16 90.1 60 73.3
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 2.1e-16 90.1 59 74.6
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 2.1e-16 90.1 59 74.6
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 2.7e-16 89.7 60 73.3
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 3.5e-16 89.4 60 75.0
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 3.5e-16 89.4 60 70.0
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 3.5e-16 89.4 59 74.6
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 3.5e-16 89.4 60 71.7
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 75.0
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 75.0
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 75.0
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 75.0
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 75.0
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 73.3
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 70.0
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 70.0
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 70.0
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 70.0
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 70.0
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 70.0
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 75.0
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 73.3
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 73.3
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 4.6e-16 89.0 60 71.7
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 6.0e-16 88.6 60 71.7
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 6.0e-16 88.6 60 73.3
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 6.0e-16 88.6 59 72.9
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 6.0e-16 88.6 60 71.7
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 7.8e-16 88.2 60 73.3
MBI16_g00841_MAGBIO Magnolia biondii HOM05D007425 ORTHO05D009334 7.8e-16 88.2 59 72.9
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 7.8e-16 88.2 60 71.7
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 1.0e-15 87.8 60 70.0
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 1.0e-15 87.8 59 74.6
Os08g0399050 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 1.0e-15 87.8 51 90.2
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 1.0e-15 87.8 60 71.7
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 1.3e-15 87.4 60 71.7
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 1.3e-15 87.4 60 68.3
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 1.3e-15 87.4 60 71.7
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 1.3e-15 87.4 60 70.0
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 1.3e-15 87.4 59 71.2
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 1.7e-15 87.0 60 71.7
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 1.7e-15 87.0 59 72.9
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 1.7e-15 87.0 60 71.7
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 2.3e-15 86.7 59 71.2
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 2.3e-15 86.7 59 71.2
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 2.3e-15 86.7 60 68.3
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 3.0e-15 86.3 60 70.0
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 3.9e-15 85.9 59 69.5
TAR636G0596 Trochodendron aralioides HOM05D007425 ORTHO05D009334 6.6e-15 85.1 59 69.5
CDE04G2079 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 8.7e-15 84.7 60 65.0
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 8.7e-15 84.7 59 69.5
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 1.1e-14 84.3 55 76.4
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 1.1e-14 84.3 59 69.5
HPP92_010419 Vanilla planifolia HOM05D007425 ORTHO05D009334 1.1e-14 84.3 59 71.2
Ca_04746_v3 Cicer arietinum L. HOM05D007425 ORTHO05D009334 2.5e-14 83.2 59 67.8
ATR0626G045 Amborella trichopoda HOM05D007425 ORTHO05D009334 5.6e-14 82.0 59 67.8
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 5.6e-14 82.0 59 67.8
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 5.6e-14 82.0 54 75.9
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 5.6e-14 82.0 54 75.9
Lalb_Chr05g0211001 Lupinus albus HOM05D007425 ORTHO05D009334 8.1e-13 78.2 60 66.7
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 1.1e-12 77.8 54 70.4
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 4.0e-12 75.9 53 71.7
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 1.5e-11 73.9 51 70.6
SEGI_06187 Sequoiadendron giganteum HOM05D007425 ORTHO05D009334 1.4e-09 67.4 59 55.9
SMO358G0357 Selaginella moellendorffii HOM05D013303 ORTHO05D015288 1.0e-07 61.2 50 66.0
Pp3c2_27330 Physcomitrium patens HOM05D007425 ORTHO05D009334 1.3e-07 60.8 53 58.5
Mapoly0070s0085 Marchantia polymorpha HOM05D007425 ORTHO05D009334 3.3e-06 56.2 58 50.0


User provided reference genes

Program Settings