Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 5.9e-74 280.8 143 100.0
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 8.6e-25 117.5 123 58.5
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 6.8e-22 107.8 109 57.8
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.7e-17 93.2 121 46.3
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 1.5e-16 90.1 107 51.4
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.5e-16 89.4 107 51.4
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.5e-16 89.4 107 51.4
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.3e-16 89.0 120 46.7
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 5.6e-16 88.2 105 50.5
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 5.6e-16 88.2 107 44.9
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 7.3e-16 87.8 105 48.6
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 9.5e-16 87.4 124 44.4
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 2.1e-15 86.3 105 48.6
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.8e-15 85.9 106 48.1
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 3.6e-15 85.5 107 43.9
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 4.7e-15 85.1 105 49.5
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 6.2e-15 84.7 105 50.5
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 6.2e-15 84.7 105 50.5
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 6.2e-15 84.7 110 50.0
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 6.2e-15 84.7 108 49.1
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 6.2e-15 84.7 108 48.1
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 8.1e-15 84.3 109 48.6
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.1e-14 84.0 111 45.0
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 1.4e-14 83.6 107 44.9
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 1.8e-14 83.2 111 45.9
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.8e-14 83.2 105 46.7
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.8e-14 83.2 105 46.7
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.3e-14 82.8 105 47.6
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.1e-14 82.4 107 46.7
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 4.0e-14 82.0 111 46.8
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 4.0e-14 82.0 105 48.6
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 6.8e-14 81.3 105 49.5
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 8.9e-14 80.9 109 46.8
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 8.9e-14 80.9 108 42.6
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 8.9e-14 80.9 112 44.6
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 8.9e-14 80.9 108 42.6
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.2e-13 80.5 107 45.8
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.5e-13 80.1 112 47.3
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.0e-13 79.7 109 45.0
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.0e-13 79.7 106 43.4
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 3.4e-13 79.0 105 45.7
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 3.4e-13 79.0 105 43.8
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 3.4e-13 79.0 109 45.0
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 4.4e-13 78.6 110 43.6
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 4.4e-13 78.6 108 50.0
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 5.8e-13 78.2 115 47.0
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 5.8e-13 78.2 108 47.2
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 5.8e-13 78.2 112 46.4
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 5.8e-13 78.2 107 43.0
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.8e-13 78.2 107 45.8
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 7.5e-13 77.8 107 45.8
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 9.9e-13 77.4 108 43.5
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 9.9e-13 77.4 108 43.5
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 9.9e-13 77.4 111 47.7
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.3e-12 77.0 106 47.2
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.3e-12 77.0 105 41.9
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.7e-12 76.6 108 44.4
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.7e-12 76.6 106 44.3
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.7e-12 76.6 107 43.0
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 2.2e-12 76.3 107 46.7
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.2e-12 76.3 108 45.4
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.2e-12 76.3 111 46.8
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 2.2e-12 76.3 105 45.7
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 2.9e-12 75.9 115 46.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.9e-12 75.9 107 43.9
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 2.9e-12 75.9 105 45.7
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 3.7e-12 75.5 125 40.8
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 3.7e-12 75.5 105 41.9
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 3.7e-12 75.5 114 43.9
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.7e-12 75.5 109 46.8
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 4.9e-12 75.1 105 46.7
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 4.9e-12 75.1 125 40.8
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 4.9e-12 75.1 105 43.8
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 4.9e-12 75.1 105 46.7
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 4.9e-12 75.1 106 44.3
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 4.9e-12 75.1 105 43.8
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 6.4e-12 74.7 105 46.7
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 6.4e-12 74.7 108 44.4
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 6.4e-12 74.7 51 70.6
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 6.4e-12 74.7 105 43.8
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 6.4e-12 74.7 105 41.9
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 8.3e-12 74.3 105 42.9
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 8.3e-12 74.3 141 39.7
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.1e-11 73.9 111 43.2
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.1e-11 73.9 114 43.0
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.1e-11 73.9 54 63.0
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.1e-11 73.9 109 45.0
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 2.4e-11 72.8 107 43.9
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 3.2e-11 72.4 105 41.9
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 4.1e-11 72.0 103 44.7
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 4.1e-11 72.0 105 46.7
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 4.1e-11 72.0 103 43.7
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 4.1e-11 72.0 105 42.9
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 4.1e-11 72.0 112 41.1
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 7.1e-11 71.2 107 42.1
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 7.1e-11 71.2 107 42.1
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.2e-10 70.5 118 42.4
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.6e-10 70.1 105 44.8
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 2.1e-10 69.7 48 70.8
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 2.1e-10 69.7 108 41.7
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.7e-10 69.3 105 42.9
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 2.7e-10 69.3 105 41.9
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 3.5e-10 68.9 103 42.7
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 3.5e-10 68.9 103 42.7
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 3.5e-10 68.9 47 70.2
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 3.5e-10 68.9 42 76.2
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.5e-10 68.9 105 40.0
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.5e-10 68.9 105 41.9
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.5e-10 68.9 105 41.0
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.6e-10 68.6 108 43.5
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 6.0e-10 68.2 40 80.0
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.0e-10 68.2 98 46.9
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.3e-09 67.0 40 75.0
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.7e-09 66.6 40 75.0
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.7e-09 66.6 105 41.9
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.7e-09 66.6 44 72.7
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.3e-09 66.2 72 48.6
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 3.9e-09 65.5 40 75.0
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 6.6e-09 64.7 107 41.1
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.1e-08 63.9 100 41.0
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 5.6e-08 61.6 55 54.5
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 5.6e-08 61.6 50 60.0
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.1e-07 59.7 36 72.2
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.8e-07 59.3 35 80.0
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 6.2e-07 58.2 43 62.8
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 6.2e-07 58.2 43 62.8
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 8.1e-07 57.8 39 66.7
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 8.1e-07 57.8 39 66.7
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 1.4e-06 57.0 93 40.9
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.8e-06 56.6 44 59.1


User provided reference genes

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