Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 0.0e+00 1859.3 936 100.0
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1352.4 961 72.5
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 1.3e-286 989.9 976 54.2
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 2.7e-284 982.2 976 54.2
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 2.3e-275 952.6 973 54.2
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 2.6e-271 939.1 972 53.5
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 5.8e-271 937.9 969 53.7
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 9.9e-271 937.2 969 53.5
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 1.3e-270 936.8 968 52.4
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 4.9e-270 934.9 973 52.3
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 3.2e-269 932.2 955 53.0
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 7.1e-269 931.0 973 52.6
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 1.7e-267 926.4 961 51.9
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 2.3e-267 926.0 961 52.8
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 1.1e-266 923.7 969 52.8
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 1.1e-266 923.7 976 52.8
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 7.3e-266 921.0 980 51.6
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 2.1e-265 919.5 991 52.3
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 6.9e-264 914.4 979 52.3
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 7.6e-263 911.0 963 52.4
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 1.3e-262 910.2 989 51.6
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 2.9e-262 909.1 969 51.0
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 2.9e-262 909.1 967 52.4
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 4.9e-262 908.3 995 50.4
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 6.4e-262 907.9 969 51.7
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 6.4e-262 907.9 965 51.4
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 8.4e-262 907.5 966 51.7
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 1.2e-260 903.7 962 51.0
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 3.5e-260 902.1 950 52.0
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 3.9e-259 898.7 969 50.9
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 3.9e-259 898.7 955 51.3
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 5.1e-259 898.3 1029 50.4
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 2.5e-258 896.0 979 51.1
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 1.6e-257 893.3 967 50.9
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 1.1e-256 890.6 955 50.3
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 1.8e-256 889.8 962 51.0
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 1.8e-256 889.8 972 50.3
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 5.8e-255 884.8 975 50.6
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 5.8e-255 884.8 984 50.5
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 9.9e-255 884.0 969 50.5
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 2.2e-254 882.9 974 50.0
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 8.4e-254 880.9 965 51.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 3.2e-253 879.0 959 50.8
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 6.0e-252 874.8 965 50.7
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 6.0e-252 874.8 1064 48.0
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 2.1e-249 866.3 963 50.7
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 2.1e-249 866.3 973 51.8
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 2.8e-249 865.9 961 49.6
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 4.8e-249 865.1 966 50.8
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 4.0e-248 862.1 973 50.1
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 2.0e-247 859.8 959 49.9
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 7.6e-247 857.8 979 49.3
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 1.3e-246 857.1 930 50.9
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 4.2e-245 852.0 976 49.0
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 1.0e-243 847.4 943 49.9
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 1.5e-242 843.6 943 49.6
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 5.6e-242 841.6 977 48.2
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 9.3e-229 797.7 1163 42.3
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 3.3e-226 789.3 917 48.5
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 6.9e-224 781.6 961 47.6
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 9.4e-221 771.2 980 44.8
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 2.7e-220 769.6 997 44.1
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 3.0e-219 766.1 1069 41.8
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 3.4e-215 752.7 943 45.6
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 1.0e-211 741.1 984 44.4
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 6.3e-209 731.9 948 45.3
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 2.0e-207 726.9 865 47.9
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 1.1e-197 694.5 920 43.2
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 1.0e-190 671.4 953 43.3
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 7.0e-176 622.1 853 43.3
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 6.6e-174 615.5 787 45.7
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 8.0e-172 608.6 779 46.3
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 2.9e-169 600.1 783 45.6
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 3.4e-162 576.6 851 42.9
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 1.1e-160 571.6 599 50.6
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 1.3e-158 564.7 707 46.0
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 3.1e-155 553.5 473 60.0
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.7e-153 547.7 726 45.6
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 3.2e-152 543.5 706 45.5
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 9.6e-149 531.9 473 59.0
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 1.2e-148 531.6 1117 33.5
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 6.3e-116 422.9 588 41.8
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 1.7e-113 414.8 416 54.6
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 1.7e-113 414.8 504 48.0
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 1.4e-102 378.6 481 46.6
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 3.9e-102 377.1 334 58.1
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 2.9e-97 360.9 632 35.3
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 5.5e-96 356.7 507 41.0
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 3.3e-93 347.4 508 41.5
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 4.4e-93 347.1 497 42.7
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 5.7e-93 346.7 531 39.5
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 4.0e-86 323.9 351 51.6
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.2e-84 318.2 492 39.8
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 2.7e-82 311.2 444 42.8
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 4.5e-82 310.5 370 48.9
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.3e-81 308.9 370 47.8
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 8.8e-78 296.2 195 70.8
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 8.3e-76 289.7 324 50.0
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 1.4e-75 288.9 183 72.1
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 8.6e-73 279.6 197 66.0
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 8.6e-65 253.1 150 76.0
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 9.5e-64 249.6 319 44.5
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 9.5e-64 249.6 362 42.3
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 2.1e-55 221.9 209 55.5
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.6e-55 221.1 321 43.3
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 9.2e-43 179.9 95 84.2
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 2.1e-42 178.7 148 59.5
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 1.1e-40 172.9 267 41.9
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.1e-31 142.1 74 85.1
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.1e-31 142.1 74 85.1
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.3e-28 132.9 120 54.2
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.7e-28 132.5 120 54.2
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.2e-26 126.3 133 52.6
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.7e-25 122.5 65 83.1
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 6.6e-25 120.6 95 54.7
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 4.9e-20 104.4 198 35.9
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 3.7e-15 88.2 84 52.4
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 1.7e-12 79.3 64 57.8
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 1.8e-09 69.3 54 61.1
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 2.8e-07 62.0 49 65.3
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 2.8e-07 62.0 65 47.7


User provided reference genes

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