Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0182800 Oryza sativa ssp. japonica HOM05D006457 ORTHO05D008275 2.0e-133 479.2 254 100.0
Zm00001eb419600 Zea mays HOM05D006457 ORTHO05D008275 7.4e-120 434.1 256 90.2
MBI18_g15334_MAGBIO Magnolia biondii HOM05D006457 ORTHO05D008275 1.1e-104 383.6 256 78.1
Hma1.2p1_0267F.1_g107360 Hydrangea macrophylla HOM05D006457 ORTHO05D008275 1.5e-104 383.3 256 76.6
DCAR_027307 Daucus carota HOM05D006457 ORTHO05D008275 3.3e-104 382.1 256 76.6
GSVIVG01027767001 Vitis vinifera HOM05D006457 ORTHO05D008275 3.3e-104 382.1 256 77.0
EL10Ac3g05029 Beta vulgaris HOM05D006457 ORTHO05D008275 4.3e-104 381.7 256 77.7
Nn1g02723 Nelumbo nucifera HOM05D006457 ORTHO05D008275 5.7e-104 381.3 256 76.2
Ah.04g156060 Amaranthus hybridus HOM05D006457 ORTHO05D008275 1.3e-103 380.2 256 77.7
PGR031G3937 Punica granatum HOM05D006457 ORTHO05D008275 1.3e-103 380.2 256 76.6
THA.LOC104801088 Tarenaya hassleriana HOM05D006457 ORTHO05D008275 2.2e-103 379.4 256 76.2
Sed0004292 Sechium edule HOM05D006457 ORTHO05D008275 2.8e-103 379.0 256 74.6
ClCG05G004380 Citrullus lanatus HOM05D006457 ORTHO05D008275 3.7e-103 378.6 254 74.8
QL06p016992 Quercus lobata HOM05D006457 ORTHO05D008275 3.7e-103 378.6 255 74.9
RcHm_v2.0_Chr4g0392411 Rosa chinensis HOM05D006457 ORTHO05D008275 3.7e-103 378.6 256 77.0
Hund03034 Selenicereus undatus HOM05D006457 ORTHO05D008275 3.7e-103 378.6 256 76.6
CSS0034990 Camellia sinensis var. sinensis HOM05D006457 ORTHO05D008275 6.3e-103 377.9 256 75.8
Eucgr.H00173 Eucalyptus grandis HOM05D006457 ORTHO05D008275 6.3e-103 377.9 256 77.3
Sc19g0003600 Simmondsia chinensis HOM05D006457 ORTHO05D008275 8.2e-103 377.5 256 76.2
HPP92_025980 Vanilla planifolia HOM05D006457 ORTHO05D008275 8.2e-103 377.5 256 78.1
AUR62002111 Chenopodium quinoa HOM05D006457 ORTHO05D008275 1.1e-102 377.1 256 77.0
Migut.N00260 Erythranthe guttata HOM05D006457 ORTHO05D008275 1.1e-102 377.1 256 75.8
Atru.chr4.2091 Acer truncatum HOM05D006457 ORTHO05D008275 1.4e-102 376.7 256 76.2
Gohir.A09G058300 Gossypium hirsutum HOM05D006457 ORTHO05D008275 1.4e-102 376.7 256 75.8
Gorai.006G072000 Gossypium raimondii HOM05D006457 ORTHO05D008275 1.4e-102 376.7 256 75.4
MSTRG.9902 Avicennia marina HOM05D006457 ORTHO05D008275 1.8e-102 376.3 256 76.2
MELO3C006434.2 Cucumis melo HOM05D006457 ORTHO05D008275 1.8e-102 376.3 256 74.6
Lj5g0021789 Lotus japonicus HOM05D006457 ORTHO05D008275 1.8e-102 376.3 256 76.2
CsaV3_3G012200 Cucumis sativus L. HOM05D006457 ORTHO05D008275 3.1e-102 375.6 256 74.6
Nn3g19624 Nelumbo nucifera HOM05D006457 ORTHO05D008275 3.1e-102 375.6 256 75.8
Peaxi162Scf00024g02411 Petunia axillaris HOM05D006457 ORTHO05D008275 4.1e-102 375.2 256 76.2
Prupe.1G037500 Prunus persica HOM05D006457 ORTHO05D008275 5.3e-102 374.8 256 75.8
Glyma.10G187300 Glycine max HOM05D006457 ORTHO05D008275 6.9e-102 374.4 256 76.6
vmacro15431 Vaccinium macrocarpon HOM05D006457 ORTHO05D008275 6.9e-102 374.4 256 74.6
VMungo0720G2635 Vigna mungo HOM05D006457 ORTHO05D008275 6.9e-102 374.4 256 76.6
Duzib212G0218 Durio zibethinus HOM05D006457 ORTHO05D008275 9.0e-102 374.0 256 75.0
Rhsim02G0036100 Rhododendron simsii HOM05D006457 ORTHO05D008275 9.0e-102 374.0 256 75.0
FvH4_4g03430 Fragaria vesca HOM05D006457 ORTHO05D008275 1.2e-101 373.6 256 75.4
Glyma.20G203200 Glycine max HOM05D006457 ORTHO05D008275 1.2e-101 373.6 256 76.6
Cc03_g05380 Coffea canephora HOM05D006457 ORTHO05D008275 1.5e-101 373.2 256 74.6
Ciclev10005707m.g Citrus clementina HOM05D006457 ORTHO05D008275 2.0e-101 372.9 256 75.4
FAN22G0441 Fragaria x ananassa HOM05D006457 ORTHO05D008275 2.0e-101 372.9 256 75.8
Cfa008326 Carpinus fangiana HOM05D006457 ORTHO05D008275 2.6e-101 372.5 256 74.6
Thecc.04G253200 Theobroma cacao HOM05D006457 ORTHO05D008275 3.4e-101 372.1 256 75.0
TPR.G26440 Trifolium pratense HOM05D006457 ORTHO05D008275 3.4e-101 372.1 256 74.6
Thhalv10003253m.g Eutrema salsugineum HOM05D006457 ORTHO05D008275 4.5e-101 371.7 256 75.0
Potri.008G165800 Populus trichocarpa HOM05D006457 ORTHO05D008275 4.5e-101 371.7 256 74.2
Haze_11345 Corylus avellana HOM05D006457 ORTHO05D008275 5.9e-101 371.3 256 74.2
ECA233G3697 Erigeron canadensis HOM05D006457 ORTHO05D008275 1.0e-100 370.5 254 75.2
HanXRQChr05g0134481 Helianthus annuus HOM05D006457 ORTHO05D008275 2.2e-100 369.4 256 74.6
CARHR180150 Cardamine hirsuta HOM05D006457 ORTHO05D008275 2.9e-100 369.0 256 73.0
TAR636G2559 Trochodendron aralioides HOM05D006457 ORTHO05D008275 2.9e-100 369.0 256 74.6
Lsat_1_v5_gn_5_72441 Lactuca sativa HOM05D006457 ORTHO05D008275 3.8e-100 368.6 252 75.0
Lj6A662T59 Lonicera japonica HOM05D006457 ORTHO05D008275 3.8e-100 368.6 256 75.4
MD13G1212500 Malus domestica HOM05D006457 ORTHO05D008275 5.0e-100 368.2 256 74.2
Aqoxy5G00253 Aquilegia oxysepala HOM05D006457 ORTHO05D008275 6.5e-100 367.9 260 74.6
arahy.Tifrunner.gnm1.ann1.YH23E2 Arachis hypogaea HOM05D006457 ORTHO05D008275 6.5e-100 367.9 254 74.8
Nitab4.5_0003897g0020 Nicotiana tabacum HOM05D006457 ORTHO05D008275 6.5e-100 367.9 256 74.6
Sp2g08310 Schrenkiella parvula HOM05D006457 ORTHO05D008275 8.5e-100 367.5 256 73.8
Solyc09g089880.3 Solanum lycopersicum HOM05D006457 ORTHO05D008275 8.5e-100 367.5 256 75.4
ATR0680G075 Amborella trichopoda HOM05D006457 ORTHO05D008275 1.1e-99 367.1 256 74.6
AL8G16870 Arabidopsis lyrata HOM05D006457 ORTHO05D008275 1.1e-99 367.1 256 73.0
arahy.Tifrunner.gnm1.ann1.AG4MDC Arachis hypogaea HOM05D006457 ORTHO05D008275 1.4e-99 366.7 256 74.2
Psat6g128760 Pisum sativum HOM05D006457 ORTHO05D008275 1.4e-99 366.7 256 75.4
Sopen09g032820 Solanum pennellii HOM05D006457 ORTHO05D008275 1.4e-99 366.7 255 75.3
AT5G43430 Arabidopsis thaliana HOM05D006457 ORTHO05D008275 1.9e-99 366.3 256 73.0
BcaC04g21915 Brassica carinata HOM05D006457 ORTHO05D008275 1.9e-99 366.3 256 74.6
Aa31LG5G3680 Aethionema arabicum HOM05D006457 ORTHO05D008275 2.5e-99 365.9 256 73.0
SGA_v2.0_scaffold67G22771 Striga asiatica HOM05D006457 ORTHO05D008275 3.2e-99 365.5 287 68.6
Nitab4.5_0000342g0030 Nicotiana tabacum HOM05D006457 ORTHO05D008275 4.2e-99 365.2 256 74.2
BolC9t55493H Brassica oleracea HOM05D006457 ORTHO05D008275 7.2e-99 364.4 253 74.3
Manes.03G165500 Manihot esculenta HOM05D006457 ORTHO05D008275 7.2e-99 364.4 256 72.7
Medtr1g074170 Medicago truncatula HOM05D006457 ORTHO05D008275 1.2e-98 363.6 256 73.4
PGSC0003DMG400017180 Solanum tuberosum HOM05D006457 ORTHO05D008275 1.2e-98 363.6 256 74.6
BcaB07g31008 Brassica carinata HOM05D006457 ORTHO05D008275 1.6e-98 363.2 257 73.5
Lalb_Chr02g0150531 Lupinus albus HOM05D006457 ORTHO05D008275 1.6e-98 363.2 256 73.8
Phvul.007G128300 Phaseolus vulgaris HOM05D006457 ORTHO05D008275 1.6e-98 363.2 256 74.6
Actinidia39894 Actinidia chinensis HOM05D006457 ORTHO05D008275 2.1e-98 362.8 256 72.7
Carub.0008s0516 Capsella rubella HOM05D006457 ORTHO05D008275 4.6e-98 361.7 256 72.3
FAN17G1464 Fragaria x ananassa HOM05D006457 ORTHO05D008275 4.6e-98 361.7 256 75.0
CAN.G793.35 Capsicum annuum HOM05D006457 ORTHO05D008275 6.1e-98 361.3 256 73.4
C09p25850 Brassica napus HOM05D006457 ORTHO05D008275 7.9e-98 360.9 253 73.9
A09p20470 Brassica napus HOM05D006457 ORTHO05D008275 1.0e-97 360.5 253 73.5
PSO210G6447 Papaver somniferum HOM05D006457 ORTHO05D008275 5.1e-97 358.2 260 72.3
PSO832G2062 Papaver somniferum HOM05D006457 ORTHO05D008275 5.1e-97 358.2 260 72.3
Ca_09820_v3 Cicer arietinum L. HOM05D006457 ORTHO05D008275 1.7e-95 353.2 285 67.4
BraA09t37652Z Brassica rapa HOM05D006457 ORTHO05D008275 2.8e-95 352.4 263 70.7
Sabra08G0126300 Salix brachista HOM05D006457 ORTHO05D008275 3.7e-95 352.1 287 65.9
SEGI_23974 Sequoiadendron giganteum HOM05D006457 ORTHO05D008275 6.9e-94 347.8 256 71.1
Dinv27040 Davidia involucrata HOM05D006457 ORTHO05D008275 3.8e-92 342.0 234 75.2
SMO145G0254 Selaginella moellendorffii HOM05D006457 ORTHO05D008275 6.5e-92 341.3 256 69.5
Mapoly0061s0138 Marchantia polymorpha HOM05D006457 ORTHO05D008275 3.6e-90 335.5 255 68.2
Pp3c16_12620 Physcomitrium patens HOM05D006457 ORTHO05D008275 3.6e-90 335.5 256 68.8
AagrBONN_evm.TU.Sc2ySwM_228.708 Anthoceros agrestis HOM05D006457 ORTHO05D008275 1.4e-89 333.6 256 69.1
AUR62028231 Chenopodium quinoa HOM05D006457 ORTHO05D008275 9.7e-88 327.4 224 77.2
FAN12G4283 Fragaria x ananassa HOM05D006457 ORTHO05D008275 1.1e-86 323.9 274 66.1
SHI00666 Sapria himalayana HOM05D006457 ORTHO05D008275 2.9e-84 315.8 271 62.7
SalBow3G1824 Salvia bowleyana HOM05D006457 ORTHO05D008275 2.2e-79 299.7 278 61.9
Haze_27028 Corylus avellana HOM05D006457 ORTHO05D008275 3.7e-79 298.9 254 63.4
TWI73G0230 Tripterygium wilfordii HOM05D006457 ORTHO05D008275 3.1e-78 295.8 254 62.6
Cpa.g.sc44.77 Carica papaya HOM05D006457 ORTHO05D008275 7.0e-78 294.7 264 61.7
PRCOL_00002410 Prasinoderma coloniale HOM05D006457 ORTHO05D008275 2.7e-77 292.7 256 60.9
Cre12.g554953 Chlamydomonas reinhardtii HOM05D006457 ORTHO05D008275 4.2e-75 285.4 278 59.0
Gohir.D09G057800 Gossypium hirsutum HOM05D006457 ORTHO05D008275 2.1e-74 283.1 194 74.7
unitig_748.g7323 Utricularia gibba HOM05D006457 ORTHO05D008275 2.3e-73 279.6 193 72.0
THA.LOC104826077 Tarenaya hassleriana HOM05D006457 ORTHO05D008275 3.1e-70 269.2 233 63.5
Dinv29877 Davidia involucrata HOM05D006457 ORTHO05D008275 2.5e-67 259.6 181 74.0
Hma1.2p1_0267F.1_g107350 Hydrangea macrophylla HOM05D006457 ORTHO05D008275 2.5e-67 259.6 180 73.9
CiPaw.02G113800 Carya illinoinensis HOM05D006457 ORTHO05D008275 9.4e-67 257.7 181 73.5
Haze_26122 Corylus avellana HOM05D006457 ORTHO05D008275 5.2e-65 251.9 252 53.6
Haze_27526 Corylus avellana HOM05D006457 ORTHO05D008275 2.6e-64 249.6 254 56.7
Cfa021602 Carpinus fangiana HOM05D006457 ORTHO05D008275 5.7e-56 221.9 254 48.0
CANSAT78G2507 Cannabis sativa HOM05D006457 ORTHO05D008275 6.4e-55 218.4 159 70.4
CDE05G1545 Ceratophyllum demersum HOM05D006457 ORTHO05D008275 1.6e-53 213.8 150 72.7
Zm00001eb087650 Zea mays HOM05D006457 ORTHO05D008275 1.3e-52 210.7 123 90.2
Oeu011992.1 Olea europaea HOM05D006457 ORTHO05D008275 1.6e-29 134.0 87 72.4
MD16G1216100 Malus domestica HOM05D006457 ORTHO05D008275 2.3e-28 130.2 95 70.5
HanXRQChr03g0066771 Helianthus annuus HOM05D006457 ORTHO05D008275 7.3e-27 125.2 100 65.0
Oeu063893.1 Olea europaea HOM05D006457 ORTHO05D000397 3.0e-20 103.2 102 58.8
Hma1.2p1_0267F.1_g107370 Hydrangea macrophylla HOM05D006457 ORTHO05D008275 7.9e-13 78.6 49 75.5
MBI15_g29425_MAGBIO Magnolia biondii HOM05D016614 ORTHO05D012466 4.3e-11 72.8 171 34.5
RcHm_v2.0_Chr5g0058341 Rosa chinensis HOM05D006457 ORTHO05D008275 1.3e-10 71.2 34 91.2
VMungo0720G2370 Vigna mungo HOM05D006457 ORTHO05D008275 2.2e-07 60.5 67 49.3


User provided reference genes

Program Settings