Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0168400 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 4.4e-98 361.3 185 100.0
Zm00001eb380810 Zea mays HOM05D008828 ORTHO05D000291 3.6e-23 112.5 143 46.2
Os06g0286146 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D000291 4.4e-21 105.5 165 41.2
Zm00001eb380790 Zea mays HOM05D008828 ORTHO05D000291 3.1e-19 99.4 137 44.5
Os06g0293500 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.8e-17 92.4 145 40.7
Zm00001eb012560 Zea mays HOM05D008828 ORTHO05D011223 9.4e-16 87.8 171 36.3
Os06g0295000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.2e-15 87.4 164 37.8
Zm00001eb380900 Zea mays HOM05D008828 ORTHO05D011223 1.6e-15 87.0 158 36.7
Zm00001eb280880 Zea mays HOM05D008828 ORTHO05D011223 2.1e-15 86.7 127 44.1
Zm00001eb381380 Zea mays HOM05D008828 ORTHO05D011223 2.1e-15 86.7 141 38.3
Os06g0296700 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.6e-15 85.9 160 39.4
Os06g0293100 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 4.7e-15 85.5 146 39.0
Os06g0294200 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 4.7e-15 85.5 145 41.4
Zm00001eb196540 Zea mays HOM05D008828 ORTHO05D011223 6.1e-15 85.1 140 42.9
Os06g0294000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.4e-14 84.0 149 35.6
Zm00001eb166220 Zea mays HOM05D008828 ORTHO05D011223 2.3e-14 83.2 133 37.6
Os06g0292100 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.0e-14 82.8 127 42.5
Os12g0141000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.0e-14 82.8 128 40.6
Os06g0294400 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 4.0e-14 82.4 149 36.2
Zm00001eb361920 Zea mays HOM05D008828 ORTHO05D000291 4.0e-14 82.4 133 42.1
Zm00001eb367720 Zea mays HOM05D008828 ORTHO05D011223 4.0e-14 82.4 133 39.1
Os11g0220500 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 5.2e-14 82.0 133 42.1
Zm00001eb028300 Zea mays HOM05D008828 ORTHO05D011223 6.8e-14 81.6 105 50.5
Os06g0285900 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 8.8e-14 81.3 158 39.9
Os06g0297300 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 8.8e-14 81.3 134 38.1
Os06g0297400 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.2e-13 80.9 129 38.0
Zm00001eb281010 Zea mays HOM05D008828 ORTHO05D011223 1.2e-13 80.9 138 40.6
Os06g0291800 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 4.4e-13 79.0 149 37.6
Os11g0682000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 5.7e-13 78.6 143 37.1
Os06g0296900 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 9.8e-13 77.8 148 35.1
Os11g0144900 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 9.8e-13 77.8 156 34.6
Zm00001eb280980 Zea mays HOM05D008828 ORTHO05D011223 9.8e-13 77.8 145 35.9
Os06g0292400 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.7e-12 75.9 153 35.9
Os06g0296100 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 8.3e-12 74.7 150 33.3
Os06g0295300 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.1e-11 74.3 146 35.6
Zm00001eb321940 Zea mays HOM05D008828 ORTHO05D011223 1.4e-11 73.9 96 43.8
Os06g0293000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.1e-11 72.8 132 40.2
Lj1A658G6 Lonicera japonica HOM05D000448 ORTHO05D000291 1.6e-10 70.5 109 38.5
Os11g0220600 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.6e-10 70.5 164 34.1
CiPaw.03G112000 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.3e-09 66.6 133 33.1
Sed0013407 Sechium edule HOM05D000448 ORTHO05D000291 2.3e-09 66.6 154 33.8
CiPaw.03G112400 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.9e-08 63.5 87 42.5
Cfa007125 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.2e-08 62.8 91 39.6
Lsat_1_v5_gn_5_78760 Lactuca sativa HOM05D000448 ORTHO05D000291 3.2e-08 62.8 142 30.3
Thecc.01G399600 Theobroma cacao HOM05D000448 ORTHO05D000291 3.2e-08 62.8 146 31.5
TPR.G23679 Trifolium pratense HOM05D000448 ORTHO05D000291 3.2e-08 62.8 171 32.7
MBI14_g28629_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 4.2e-08 62.4 104 39.4
arahy.Tifrunner.gnm1.ann1.PR1UBX Arachis hypogaea HOM05D000448 ORTHO05D000291 5.5e-08 62.0 181 31.5
Duzib168G2346 Durio zibethinus HOM05D000448 ORTHO05D000291 5.5e-08 62.0 111 34.2
Actinidia19136 Actinidia chinensis HOM05D000448 ORTHO05D000291 7.2e-08 61.6 99 40.4
arahy.Tifrunner.gnm1.ann1.ZI8BLB Arachis hypogaea HOM05D000448 ORTHO05D000291 7.2e-08 61.6 184 31.5
COL.COLO4_12382 Corchorus olitorius HOM05D000448 ORTHO05D000291 7.2e-08 61.6 160 28.8
Ciclev10008188m.g Citrus clementina HOM05D000448 ORTHO05D000291 9.5e-08 61.2 130 30.8
Eucgr.E02804 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.5e-08 61.2 118 29.7
Lj1A655T54 Lonicera japonica HOM05D000448 ORTHO05D000291 9.5e-08 61.2 108 35.2
RcHm_v2.0_Chr1g0345971 Rosa chinensis HOM05D000448 ORTHO05D000291 9.5e-08 61.2 149 34.2
Cfa019724 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.2e-07 60.8 125 35.2
Eucgr.C01650 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.6e-07 60.5 159 28.3
FAN03G3153 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.6e-07 60.5 162 30.9
Glyma.13G130300 Glycine max HOM05D000448 ORTHO05D000291 1.6e-07 60.5 95 37.9
QL04p028865 Quercus lobata HOM05D000448 ORTHO05D000291 1.6e-07 60.5 144 30.6
CiPaw.03G110600 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.1e-07 60.1 79 39.2
Manes.05G056701 Manihot esculenta HOM05D000448 ORTHO05D000291 2.1e-07 60.1 152 31.6
PGR142G0312 Punica granatum HOM05D000448 ORTHO05D000291 2.1e-07 60.1 120 35.0
Cfa011048 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.8e-07 59.7 88 38.6
Cfa018491 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.8e-07 59.7 174 29.9
Cfa019709 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.8e-07 59.7 118 34.7
Eucgr.C03607 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.8e-07 59.7 73 43.8
Eucgr.D01209 Eucalyptus grandis HOM05D000480 ORTHO05D000313 2.8e-07 59.7 148 31.1
Medtr7g087540 Medicago truncatula HOM05D000448 ORTHO05D000291 2.8e-07 59.7 155 32.3
Sed0015187 Sechium edule HOM05D000448 ORTHO05D000291 2.8e-07 59.7 169 28.4
GSVIVG01015139001 Vitis vinifera HOM05D000448 ORTHO05D000291 2.8e-07 59.7 100 35.0
FAN10G1399 Fragaria x ananassa HOM05D000448 ORTHO05D000291 3.6e-07 59.3 150 32.0
Gohir.D12G101000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 3.6e-07 59.3 149 30.2
Lj7A549T53 Lonicera japonica HOM05D000448 ORTHO05D000313 3.6e-07 59.3 83 37.3
QL04p028978 Quercus lobata HOM05D000448 ORTHO05D000291 3.6e-07 59.3 133 33.1
GSVIVG01015136001 Vitis vinifera HOM05D000448 ORTHO05D000291 3.6e-07 59.3 88 37.5
CiPaw.03G111300 Carya illinoinensis HOM05D000448 ORTHO05D000291 4.7e-07 58.9 88 36.4
Duzib192G1008 Durio zibethinus HOM05D000448 ORTHO05D000291 4.7e-07 58.9 121 33.9
FvH4_1g05220 Fragaria vesca HOM05D000448 ORTHO05D000291 4.7e-07 58.9 81 39.5
FAN23G0799 Fragaria x ananassa HOM05D000007 ORTHO05D005026 4.7e-07 58.9 81 39.5
Lj1A658T5 Lonicera japonica HOM05D000448 ORTHO05D000291 4.7e-07 58.9 100 35.0
Actinidia38517 Actinidia chinensis HOM05D000448 ORTHO05D000291 6.1e-07 58.5 88 40.9
COL.COLO4_12381 Corchorus olitorius HOM05D000448 ORTHO05D000291 6.1e-07 58.5 135 33.3
COL.COLO4_35167 Corchorus olitorius HOM05D000448 ORTHO05D000291 6.1e-07 58.5 146 28.1
Eucgr.C03374 Eucalyptus grandis HOM05D000448 ORTHO05D000291 6.1e-07 58.5 103 35.0
HanXRQChr12g0358831 Helianthus annuus HOM05D000448 ORTHO05D000291 6.1e-07 58.5 105 33.3
RcHm_v2.0_Chr5g0006001 Rosa chinensis HOM05D000448 ORTHO05D000291 6.1e-07 58.5 130 34.6
COL.COLO4_30807 Corchorus olitorius HOM05D000448 ORTHO05D000291 8.0e-07 58.2 113 33.6
Gohir.A12G098066 Gossypium hirsutum HOM05D000448 ORTHO05D000291 8.0e-07 58.2 159 27.7
MBI14_g39031_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 8.0e-07 58.2 115 37.4
Sc09g0010050 Simmondsia chinensis HOM05D000448 ORTHO05D000291 8.0e-07 58.2 104 35.6
Sc09g0010080 Simmondsia chinensis HOM05D000448 ORTHO05D000291 8.0e-07 58.2 163 30.7
Cfa013308 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.0e-06 57.8 99 36.4
CiPaw.03G111600 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.0e-06 57.8 128 32.8
FvH4_7g09310 Fragaria vesca HOM05D000448 ORTHO05D000291 1.0e-06 57.8 160 31.9
FAN06G3977 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.0e-06 57.8 160 31.9
Gorai.008G109800 Gossypium raimondii HOM05D000448 ORTHO05D000291 1.0e-06 57.8 141 32.6
Gorai.008G109900 Gossypium raimondii HOM05D000448 ORTHO05D000291 1.0e-06 57.8 149 29.5
QL04p028951 Quercus lobata HOM05D000448 ORTHO05D000291 1.0e-06 57.8 121 33.9
RcHm_v2.0_Chr1g0341001 Rosa chinensis HOM05D000448 ORTHO05D000291 1.0e-06 57.8 178 30.3
TPR.G23650 Trifolium pratense HOM05D000448 ORTHO05D000291 1.0e-06 57.8 112 36.6
Duzib268G1481 Durio zibethinus HOM05D000448 ORTHO05D000291 1.4e-06 57.4 136 27.9
Eucgr.C03383 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.4e-06 57.4 98 35.7
FAN24G3054 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.4e-06 57.4 74 39.2
Lsat_1_v5_gn_5_78720 Lactuca sativa HOM05D000448 ORTHO05D000291 1.4e-06 57.4 101 35.6
MBI14_g34694_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.4e-06 57.4 106 34.0
MBI14_g45558_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.4e-06 57.4 110 36.4
Nn3g19311 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.4e-06 57.4 110 32.7
Sabra14G0052400 Salix brachista HOM05D000448 ORTHO05D000291 1.4e-06 57.4 154 32.5
SalBow1G8687 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.4e-06 57.4 131 32.1
CiPaw.03G112200 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.8e-06 57.0 68 44.1
Duzib168G2221 Durio zibethinus HOM05D000448 ORTHO05D000291 1.8e-06 57.0 152 30.9
HanXRQChr12g0358821 Helianthus annuus HOM05D000448 ORTHO05D000291 1.8e-06 57.0 150 28.7
Psat6g065480 Pisum sativum HOM05D000448 ORTHO05D000291 1.8e-06 57.0 112 33.9
Actinidia04972 Actinidia chinensis HOM05D000448 ORTHO05D000291 2.3e-06 56.6 111 31.5
Eucgr.C03371 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.3e-06 56.6 103 36.9
Eucgr.L00439 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.3e-06 56.6 90 35.6
Gohir.D12G101250 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.3e-06 56.6 153 27.5
Lj3g0007023 Lotus japonicus HOM05D000448 ORTHO05D000291 2.3e-06 56.6 162 34.0
QL04p028833 Quercus lobata HOM05D000448 ORTHO05D000291 2.3e-06 56.6 142 31.7
Sc09g0010010 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.3e-06 56.6 143 29.4
Thecc.06G183100 Theobroma cacao HOM05D000448 ORTHO05D000291 2.3e-06 56.6 152 29.6
vmacro01113 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 2.3e-06 56.6 91 40.7
COL.COLO4_21112 Corchorus olitorius HOM05D000448 ORTHO05D000291 3.0e-06 56.2 80 41.2
Eucgr.C01737 Eucalyptus grandis HOM05D000448 ORTHO05D000291 3.0e-06 56.2 146 29.5
Eucgr.C03399 Eucalyptus grandis HOM05D000448 ORTHO05D000291 3.0e-06 56.2 103 34.0
FvH4_2g31330 Fragaria vesca HOM05D000448 ORTHO05D000291 3.0e-06 56.2 74 39.2
Glyma.10G042950 Glycine max HOM05D000448 ORTHO05D000291 3.0e-06 56.2 107 34.6
Glyma.18G247600 Glycine max HOM05D000448 ORTHO05D000291 3.0e-06 56.2 140 30.7
Gorai.008G110300 Gossypium raimondii HOM05D000448 ORTHO05D000291 3.0e-06 56.2 153 27.5
Thecc.01G399200 Theobroma cacao HOM05D000448 ORTHO05D000291 3.0e-06 56.2 144 31.9
CAN.G1585.3 Capsicum annuum HOM05D000480 ORTHO05D000313 4.0e-06 55.8 89 34.8
Gohir.D12G100900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 4.0e-06 55.8 141 31.9
Gohir.D12G101200 Gossypium hirsutum HOM05D000448 ORTHO05D000291 4.0e-06 55.8 136 30.9
GSVIVG01035440001 Vitis vinifera HOM05D000448 ORTHO05D000291 4.0e-06 55.8 131 29.0
Eucgr.C03917 Eucalyptus grandis HOM05D000448 ORTHO05D000291 5.2e-06 55.5 72 40.3
Gohir.A12G097900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 5.2e-06 55.5 141 31.9
Potri.014G050900 Populus trichocarpa HOM05D000448 ORTHO05D000291 5.2e-06 55.5 83 33.7
QL04p028872 Quercus lobata HOM05D000448 ORTHO05D000291 5.2e-06 55.5 122 31.1
RcHm_v2.0_Chr6g0311491 Rosa chinensis HOM05D000448 ORTHO05D000291 5.2e-06 55.5 102 33.3
Eucgr.C03388 Eucalyptus grandis HOM05D000448 ORTHO05D000291 6.8e-06 55.1 103 34.0
Glyma.18G247650 Glycine max HOM05D000448 ORTHO05D000291 6.8e-06 55.1 141 31.9
PGR142G2131 Punica granatum HOM05D000448 ORTHO05D000291 6.8e-06 55.1 161 29.8
SalBow4G2869 Salvia bowleyana HOM05D000448 ORTHO05D000291 6.8e-06 55.1 129 30.2
SGA_v2.0_scaffold20G09213 Striga asiatica HOM05D000448 ORTHO05D000291 6.8e-06 55.1 139 30.2
Zm00001eb021910 Zea mays HOM05D008828 ORTHO05D011223 6.8e-06 55.1 137 32.8
Atru.chr7.1898 Acer truncatum HOM05D000448 ORTHO05D000291 8.8e-06 54.7 153 30.1
arahy.Tifrunner.gnm1.ann1.FECP0X Arachis hypogaea HOM05D000448 ORTHO05D000291 8.8e-06 54.7 95 34.7
Eucgr.D01200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 8.8e-06 54.7 130 31.5
Os01g0254400 Oryza sativa ssp. japonica HOM05D018150 ORTHO05D020928 8.8e-06 54.7 88 36.4
Psat3g083880 Pisum sativum HOM05D000448 ORTHO05D000291 8.8e-06 54.7 111 36.9
PGR004G2034 Punica granatum HOM05D000448 ORTHO05D000291 8.8e-06 54.7 137 30.7
PGR142G2718 Punica granatum HOM05D000448 ORTHO05D000291 8.8e-06 54.7 90 35.6
Sabra14G0038100 Salix brachista HOM05D000448 ORTHO05D000291 8.8e-06 54.7 74 36.5


User provided reference genes

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