Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 5.0e-34 147.1 71 100.0
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 1.7e-26 122.1 71 78.9
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 1.1e-25 119.4 69 76.8
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 1.5e-25 119.0 71 77.5
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 1.5e-25 119.0 71 77.5
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 1.5e-25 119.0 71 80.3
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 74.6
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 74.6
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 2.5e-25 118.2 71 74.6
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 4.3e-25 117.5 71 73.2
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 1.6e-24 115.5 73 76.7
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 1.6e-24 115.5 73 74.0
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 2.8e-24 114.8 69 73.9
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 2.8e-24 114.8 72 75.0
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 2.8e-24 114.8 73 74.0
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 3.6e-24 114.4 71 74.6
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 3.6e-24 114.4 71 74.6
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 3.6e-24 114.4 72 73.6
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 73.2
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 6.2e-24 113.6 73 74.0
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 6.2e-24 113.6 72 73.6
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 8.0e-24 113.2 72 76.4
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 8.0e-24 113.2 73 74.0
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 8.0e-24 113.2 73 74.0
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 8.0e-24 113.2 73 74.0
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 8.0e-24 113.2 71 73.2
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 1.4e-23 112.5 72 75.0
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 1.4e-23 112.5 69 75.4
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 1.4e-23 112.5 73 72.6
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 1.4e-23 112.5 72 73.6
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 1.8e-23 112.1 72 73.6
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 71.8
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 71.8
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 71.8
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 71.8
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 71.8
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 71.8
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 71.8
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 1.8e-23 112.1 72 73.6
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 1.8e-23 112.1 73 72.6
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 71.8
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.3e-23 111.7 73 71.2
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 2.3e-23 111.7 71 73.2
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 2.3e-23 111.7 71 73.2
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 2.3e-23 111.7 73 74.0
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 4.0e-23 110.9 72 75.0
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 4.0e-23 110.9 72 76.4
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 6.8e-23 110.2 72 70.8
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 8.9e-23 109.8 71 70.4
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 8.9e-23 109.8 71 71.8
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 8.9e-23 109.8 71 71.8
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 1.2e-22 109.4 71 73.2
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 1.2e-22 109.4 71 73.2
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 1.2e-22 109.4 71 71.8
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 1.5e-22 109.0 64 76.6
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 1.5e-22 109.0 70 70.0
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.5e-22 109.0 73 72.6
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 1.5e-22 109.0 71 70.4
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 2.0e-22 108.6 71 69.0
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 2.0e-22 108.6 71 70.4
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 2.0e-22 108.6 72 69.4
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 2.6e-22 108.2 71 73.2
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 2.6e-22 108.2 71 73.2
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 2.6e-22 108.2 72 69.4
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 2.6e-22 108.2 71 70.4
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 2.6e-22 108.2 71 69.0
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 4.4e-22 107.5 71 70.4
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 4.4e-22 107.5 71 71.8
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 5.8e-22 107.1 71 69.0
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 7.5e-22 106.7 73 69.9
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 7.5e-22 106.7 70 71.4
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 7.5e-22 106.7 71 70.4
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 9.8e-22 106.3 71 70.4
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 9.8e-22 106.3 71 70.4
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 9.8e-22 106.3 70 71.4
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 1.3e-21 105.9 71 70.4
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.3e-21 105.9 71 70.4
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.3e-21 105.9 71 70.4
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 1.3e-21 105.9 71 69.0
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 1.3e-21 105.9 71 69.0
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.2e-21 105.1 73 69.9
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 2.2e-21 105.1 70 74.3
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 2.2e-21 105.1 71 69.0
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 2.2e-21 105.1 71 69.0
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.9e-21 104.8 73 69.9
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 3.7e-21 104.4 71 69.0
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 4.9e-21 104.0 70 67.1
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 8.3e-21 103.2 69 68.1
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 8.3e-21 103.2 74 67.6
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 1.1e-20 102.8 69 66.7
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 1.4e-20 102.4 64 75.0
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 9.2e-20 99.8 63 69.8
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 9.2e-20 99.8 63 71.4
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 1.6e-19 99.0 64 71.9
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 1.6e-19 99.0 64 71.9
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 1.6e-19 99.0 81 56.8
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 3.5e-19 97.8 63 69.8
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 3.5e-19 97.8 63 69.8
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 7.8e-19 96.7 63 69.8
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 1.3e-18 95.9 64 70.3
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 1.3e-18 95.9 71 63.4
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 2.3e-18 95.1 62 67.7
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 6.2e-16 87.0 60 68.3
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 1.1e-15 86.3 66 65.2
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 1.4e-12 75.9 65 60.0
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 2.1e-11 72.0 51 68.6
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 2.1e-11 72.0 52 65.4
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 1.6e-08 62.4 64 45.3


User provided reference genes

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