Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 5.4e-66 254.2 131 100.0
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 5.4e-66 254.2 131 100.0
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 1.9e-63 245.7 131 94.7
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 7.3e-63 243.8 131 93.9
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 6.8e-61 237.3 131 91.6
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 8.9e-61 236.9 131 91.6
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 1.5e-60 236.1 131 90.8
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.6e-60 235.3 131 91.6
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.6e-60 235.3 131 91.6
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 2.6e-60 235.3 131 90.8
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 3.4e-60 235.0 131 89.3
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 3.4e-60 235.0 131 90.8
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 5.8e-60 234.2 131 89.3
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 5.8e-60 234.2 131 90.1
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 91.6
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 91.6
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 90.8
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 9.8e-60 233.4 129 89.1
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 9.8e-60 233.4 131 90.8
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 9.8e-60 233.4 131 89.3
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 1.3e-59 233.0 131 90.8
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 1.3e-59 233.0 131 88.5
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 1.3e-59 233.0 131 90.8
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 1.7e-59 232.6 131 90.1
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 1.7e-59 232.6 131 88.5
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 1.7e-59 232.6 131 89.3
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 1.7e-59 232.6 131 89.3
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 2.2e-59 232.3 131 88.5
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 2.2e-59 232.3 131 89.3
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 2.2e-59 232.3 131 90.1
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.2e-59 232.3 131 90.1
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 2.2e-59 232.3 131 90.8
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.9e-59 231.9 131 90.8
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 2.9e-59 231.9 131 88.5
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 2.9e-59 231.9 131 89.3
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 2.9e-59 231.9 131 89.3
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 2.9e-59 231.9 131 90.1
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 3.7e-59 231.5 131 88.5
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 3.7e-59 231.5 131 90.1
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 3.7e-59 231.5 130 89.2
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 88.5
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 89.3
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 89.3
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 88.5
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 90.1
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 90.1
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 6.4e-59 230.7 131 90.1
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 6.4e-59 230.7 131 88.5
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 8.3e-59 230.3 131 89.3
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.3e-59 230.3 131 89.3
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.3e-59 230.3 131 89.3
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 8.3e-59 230.3 129 86.8
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 1.1e-58 229.9 131 85.5
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.1e-58 229.9 131 87.8
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.4e-58 229.6 131 87.0
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 1.4e-58 229.6 131 88.5
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.4e-58 229.6 131 87.8
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 1.9e-58 229.2 131 88.5
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.9e-58 229.2 131 88.5
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.9e-58 229.2 131 88.5
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 1.9e-58 229.2 129 88.4
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.9e-58 229.2 131 88.5
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 1.9e-58 229.2 131 91.6
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 1.9e-58 229.2 131 88.5
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.9e-58 229.2 131 89.3
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 2.4e-58 228.8 131 90.1
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 2.4e-58 228.8 131 87.8
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 2.4e-58 228.8 131 88.5
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 4.1e-58 228.0 131 86.3
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 4.1e-58 228.0 131 87.0
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 4.1e-58 228.0 129 89.1
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 4.1e-58 228.0 131 87.0
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 4.1e-58 228.0 131 86.3
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 5.4e-58 227.6 131 86.3
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.4e-58 227.6 131 87.8
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 5.4e-58 227.6 131 88.5
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 5.4e-58 227.6 131 88.5
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 5.4e-58 227.6 131 87.0
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 5.4e-58 227.6 131 86.3
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 5.4e-58 227.6 131 85.5
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 7.1e-58 227.3 131 87.8
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 7.1e-58 227.3 131 89.3
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 7.1e-58 227.3 131 87.8
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 9.2e-58 226.9 131 87.8
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 9.2e-58 226.9 131 87.0
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.2e-57 226.5 131 87.8
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 1.2e-57 226.5 131 86.3
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 1.2e-57 226.5 131 87.8
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 1.6e-57 226.1 131 84.7
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.1e-57 225.7 131 86.3
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 2.7e-57 225.3 129 87.6
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 2.7e-57 225.3 129 87.6
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 4.6e-57 224.6 131 88.5
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 6.0e-57 224.2 131 84.0
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 6.0e-57 224.2 131 85.5
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 7.8e-57 223.8 126 88.1
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 7.8e-57 223.8 131 88.5
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 1.0e-56 223.4 131 87.0
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 1.3e-56 223.0 131 86.3
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.7e-56 222.6 123 90.2
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 1.7e-56 222.6 126 85.7
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 2.3e-56 222.2 131 85.5
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 2.3e-56 222.2 126 87.3
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 3.0e-56 221.9 126 86.5
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 3.0e-56 221.9 126 86.5
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 3.0e-56 221.9 126 86.5
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 3.0e-56 221.9 126 86.5
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 3.0e-56 221.9 126 86.5
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 3.0e-56 221.9 126 86.5
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 3.0e-56 221.9 126 86.5
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 3.9e-56 221.5 131 84.7
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 6.6e-56 220.7 126 85.7
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 6.6e-56 220.7 126 85.7
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 6.6e-56 220.7 126 85.7
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 8.6e-56 220.3 130 83.8
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.1e-55 219.9 131 84.7
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 1.9e-55 219.2 126 84.1
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.5e-55 218.8 131 84.7
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 2.5e-55 218.8 131 83.2
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 3.3e-55 218.4 126 84.1
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 3.3e-55 218.4 126 84.1
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 3.3e-55 218.4 129 84.5
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 5.6e-55 217.6 123 88.6
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 5.6e-55 217.6 123 88.6
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 1.2e-54 216.5 129 84.5
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.6e-54 216.1 131 83.2
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 2.8e-54 215.3 131 84.0
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 3.6e-54 214.9 133 82.0
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 3.6e-54 214.9 115 93.0
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 1.1e-53 213.4 123 87.0
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 3.1e-53 211.8 115 92.2
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 3.1e-53 211.8 115 93.0
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.0e-53 211.5 131 84.0
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 5.2e-53 211.1 115 91.3
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 8.9e-53 210.3 139 77.7
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 2.6e-52 208.8 139 77.0
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 7.6e-52 207.2 110 95.5
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.7e-51 206.1 111 91.9
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 4.9e-51 204.5 115 90.4
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 6.4e-51 204.1 156 71.8
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 1.9e-50 202.6 160 70.0
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 2.4e-50 202.2 124 79.0
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 3.5e-49 198.4 115 81.7
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 6.0e-49 197.6 114 83.3
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 1.0e-48 196.8 122 82.8
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 3.9e-48 194.9 117 79.5
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 3.6e-46 188.3 129 77.5
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 6.2e-46 187.6 124 70.2
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 8.1e-46 187.2 105 85.7
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 8.1e-46 187.2 105 85.7
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 8.1e-46 187.2 102 87.3
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.4e-45 186.4 117 81.2
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 6.8e-45 184.1 100 90.0
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 2.2e-43 179.1 121 70.2
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.1e-42 176.8 102 82.4
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.7e-41 172.2 115 80.0
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.7e-41 172.2 115 80.0
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 3.5e-41 171.8 98 83.7
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 9.6e-39 163.7 102 78.4
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 1.6e-38 162.9 129 67.4
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 2.8e-38 162.2 108 69.4
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 4.8e-38 161.4 115 66.1
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 6.2e-38 161.0 131 68.7
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 2.4e-37 159.1 113 64.6
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 2.0e-36 156.0 89 88.8
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 5.8e-36 154.5 103 75.7
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 7.6e-36 154.1 81 92.6
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 8.4e-35 150.6 82 89.0
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 2.4e-34 149.1 82 90.2
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 1.7e-27 126.3 80 80.0
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 6.4e-27 124.4 78 79.5
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 1.9e-26 122.9 113 60.2
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 7.1e-26 120.9 77 74.0
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 2.7e-25 119.0 112 49.1
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.5e-25 118.6 63 92.1
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.6e-22 109.8 68 77.9
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 4.8e-22 108.2 69 78.3
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 5.3e-21 104.8 55 90.9
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 9.0e-21 104.0 52 94.2
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 2.6e-20 102.4 52 92.3
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 1.7e-19 99.8 67 74.6
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 1.9e-15 86.3 58 79.3
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 8.2e-14 80.9 48 77.1
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.1e-10 70.5 35 85.7
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 1.4e-10 70.1 35 88.6


User provided reference genes

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