Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.4e-75 286.2 145 100.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.1e-46 190.3 122 81.1
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 4.4e-45 184.9 138 65.9
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 5.8e-45 184.5 138 65.2
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 7.6e-45 184.1 115 78.3
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.3e-44 183.3 120 70.8
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 1.7e-44 183.0 116 74.1
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.7e-44 183.0 137 68.6
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.7e-44 183.0 137 68.6
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.9e-44 182.2 135 64.4
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.9e-44 182.2 136 64.7
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 2.9e-44 182.2 134 65.7
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 3.8e-44 181.8 138 69.6
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 4.9e-44 181.4 116 75.9
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 4.9e-44 181.4 128 68.8
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 4.9e-44 181.4 137 64.2
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 6.4e-44 181.0 135 64.4
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 8.4e-44 180.6 136 69.1
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 8.4e-44 180.6 112 77.7
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.4e-43 179.9 116 76.7
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.4e-43 179.9 134 64.9
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.4e-43 179.9 135 67.4
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 1.9e-43 179.5 118 71.2
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.9e-43 179.5 129 68.2
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.9e-43 179.5 112 76.8
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 2.4e-43 179.1 118 71.2
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 2.4e-43 179.1 134 63.4
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 3.2e-43 178.7 115 75.7
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 5.4e-43 177.9 134 63.4
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 5.4e-43 177.9 116 74.1
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 2.7e-42 175.6 121 71.9
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 2.7e-42 175.6 117 68.4
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.7e-42 175.6 137 66.4
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.7e-42 175.6 141 63.1
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 4.6e-42 174.9 112 76.8
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 6.0e-42 174.5 116 71.6
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 6.0e-42 174.5 134 64.2
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 7.8e-42 174.1 133 64.7
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.0e-41 173.7 134 61.9
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.0e-41 173.7 138 63.8
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.0e-41 173.7 139 65.5
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.3e-41 173.3 129 65.1
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.3e-41 173.3 132 65.2
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.0e-41 172.2 116 73.3
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.0e-41 172.2 116 73.3
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.9e-41 171.8 112 73.2
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 5.1e-41 171.4 116 69.8
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 5.1e-41 171.4 116 69.0
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 5.1e-41 171.4 107 76.6
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 8.7e-41 170.6 134 67.2
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.1e-40 170.2 143 60.8
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.5e-40 169.9 111 74.8
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.9e-40 169.5 134 62.7
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.9e-40 169.5 136 60.3
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 4.3e-40 168.3 116 69.0
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 4.3e-40 168.3 136 62.5
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.3e-39 166.8 133 62.4
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 2.1e-39 166.0 116 71.6
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 2.8e-39 165.6 129 63.6
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 3.6e-39 165.2 111 69.4
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 6.2e-39 164.5 120 69.2
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 1.1e-38 163.7 117 67.5
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.1e-38 163.7 138 59.4
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.8e-38 162.9 116 69.8
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 2.4e-38 162.5 118 66.9
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 4.0e-38 161.8 134 59.7
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 2.6e-37 159.1 118 65.3
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 4.5e-37 158.3 117 66.7
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.1e-35 153.7 112 66.1
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 3.2e-35 152.1 122 59.0
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 2.1e-34 149.4 118 63.6
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.1e-34 149.4 116 61.2
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.3e-33 146.0 98 70.4
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 3.0e-33 145.6 98 70.4
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 3.0e-33 145.6 118 61.9
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 8.7e-33 144.1 106 67.9
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.9e-32 142.9 98 69.4
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.9e-28 129.0 134 57.5
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 8.4e-28 127.5 77 76.6
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.4e-27 126.7 101 63.4
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.9e-27 126.3 75 80.0
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 2.4e-27 125.9 82 72.0
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 4.2e-27 125.2 99 64.6
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 4.2e-27 125.2 116 58.6
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.1e-26 122.9 102 62.7
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 2.1e-26 122.9 80 72.5
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.7e-26 122.5 104 63.5
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 3.5e-26 122.1 75 74.7
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 7.9e-26 120.9 92 62.0
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 7.9e-26 120.9 80 72.5
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.3e-25 120.2 116 55.2
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 2.3e-25 119.4 118 55.1
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 2.3e-25 119.4 90 64.4
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 2.3e-25 119.4 90 64.4
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 3.0e-25 119.0 80 73.8
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 3.9e-25 118.6 67 79.1
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 5.1e-25 118.2 97 61.9
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 5.1e-25 118.2 99 64.6
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 5.1e-25 118.2 99 64.6
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 8.7e-25 117.5 110 56.4
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 8.7e-25 117.5 110 56.4
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 8.7e-25 117.5 110 56.4
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 8.7e-25 117.5 106 60.4
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 1.1e-24 117.1 115 53.9
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 1.1e-24 117.1 115 53.9
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.1e-24 117.1 135 51.1
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.5e-24 115.9 80 70.0
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.5e-24 115.9 80 70.0
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.3e-23 113.6 80 68.8
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.3e-23 113.6 80 67.5
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.3e-23 113.6 80 63.8
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 1.3e-23 113.6 80 63.8
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.6e-23 113.2 87 59.8
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 3.7e-23 112.1 102 57.8
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.4e-22 110.2 66 77.3
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.0e-21 106.3 89 55.1
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 6.5e-20 101.3 98 55.1
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.1e-19 97.8 121 48.8
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.2e-18 97.1 95 54.7
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.2e-18 97.1 95 54.7
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.6e-18 96.7 48 93.8
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 6.0e-18 94.7 90 56.7
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.8e-14 83.2 77 62.3
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 3.6e-10 68.9 93 44.1
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 5.7e-08 61.6 75 46.7
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.3e-07 60.5 55 52.7
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 2.8e-07 59.3 80 43.8
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 6.3e-07 58.2 75 37.3
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 1.1e-06 57.4 62 48.4
SEGI_21581 Sequoiadendron giganteum HOM05D005384 ORTHO05D006477 1.1e-06 57.4 66 43.9
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.4e-06 57.0 86 38.4
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 1.4e-06 57.0 42 59.5
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.8e-06 56.6 50 54.0
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 1.8e-06 56.6 50 54.0
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.4e-06 56.2 42 57.1
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.4e-06 56.2 29 86.2
FvH4_2g25582 Fragaria vesca HOM05D002899 ORTHO05D010192 2.4e-06 56.2 93 34.4
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 3.1e-06 55.8 84 32.1
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 3.1e-06 55.8 42 57.1
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 3.1e-06 55.8 115 34.8
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 3.1e-06 55.8 91 38.5
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 4.1e-06 55.5 59 45.8
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 4.1e-06 55.5 42 54.8
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 4.1e-06 55.5 42 57.1
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 4.1e-06 55.5 48 50.0
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 4.1e-06 55.5 95 33.7
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.1e-06 55.5 77 39.0
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 4.1e-06 55.5 59 47.5
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 5.3e-06 55.1 58 46.6
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 5.3e-06 55.1 39 59.0
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 5.3e-06 55.1 66 42.4
PSO782G4681 Papaver somniferum HOM05D005384 ORTHO05D006477 5.3e-06 55.1 66 42.4
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 5.3e-06 55.1 64 43.8
SEGI_21570 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 5.3e-06 55.1 41 58.5
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 5.3e-06 55.1 56 50.0
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 6.9e-06 54.7 61 45.9
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 6.9e-06 54.7 61 45.9
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 6.9e-06 54.7 61 45.9
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 6.9e-06 54.7 45 53.3
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 6.9e-06 54.7 86 37.2
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 6.9e-06 54.7 100 34.0
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 6.9e-06 54.7 100 34.0
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 6.9e-06 54.7 92 41.3
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 6.9e-06 54.7 56 46.4
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 9.1e-06 54.3 53 47.2
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 9.1e-06 54.3 70 42.9
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 9.1e-06 54.3 42 54.8
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 9.1e-06 54.3 95 38.9
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 9.1e-06 54.3 77 39.0
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 9.1e-06 54.3 42 54.8
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 9.1e-06 54.3 77 35.1
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 9.1e-06 54.3 118 33.1
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 9.1e-06 54.3 53 47.2
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 9.1e-06 54.3 42 54.8
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 9.1e-06 54.3 42 54.8
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 9.1e-06 54.3 42 54.8
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 9.1e-06 54.3 42 54.8
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 9.1e-06 54.3 54 50.0
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.1e-06 54.3 77 40.3
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 9.1e-06 54.3 58 46.6
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 9.1e-06 54.3 42 54.8
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 9.1e-06 54.3 42 54.8
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 9.1e-06 54.3 42 54.8


User provided reference genes

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