Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.4e-87 325.5 164 100.0
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 6.0e-14 81.6 77 62.3
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 3.6e-11 72.4 59 62.7
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.8e-10 70.1 63 61.9
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 5.2e-10 68.6 59 57.6
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.5e-09 67.0 75 53.3
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.5e-09 67.0 75 53.3
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 2.6e-09 66.2 59 59.3
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 3.4e-09 65.9 75 53.3
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 4.4e-09 65.5 75 52.0
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 5.8e-09 65.1 61 55.7
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 7.6e-09 64.7 61 54.1
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.7e-08 63.5 61 55.7
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.7e-08 63.5 55 60.0
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 1.7e-08 63.5 59 54.2
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.7e-08 63.5 75 52.0
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 2.2e-08 63.2 59 54.2
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.2e-08 63.2 59 54.2
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.2e-08 63.2 59 55.9
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 2.2e-08 63.2 75 50.7
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 2.2e-08 63.2 61 52.5
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.9e-08 62.8 59 52.5
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 2.9e-08 62.8 59 52.5
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.9e-08 62.8 61 50.8
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 2.9e-08 62.8 86 50.0
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 3.8e-08 62.4 59 54.2
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.8e-08 62.4 86 45.3
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 3.8e-08 62.4 59 54.2
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 3.8e-08 62.4 75 49.3
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 3.8e-08 62.4 57 52.6
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 3.8e-08 62.4 59 57.6
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 3.8e-08 62.4 64 54.7
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 4.9e-08 62.0 79 48.1
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.9e-08 62.0 75 49.3
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 6.4e-08 61.6 61 52.5
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 6.4e-08 61.6 57 52.6
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 8.4e-08 61.2 57 56.1
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 8.4e-08 61.2 57 56.1
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 8.4e-08 61.2 59 54.2
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 8.4e-08 61.2 59 52.5
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 8.4e-08 61.2 62 53.2
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 8.4e-08 61.2 82 43.9
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 8.4e-08 61.2 59 52.5
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 8.4e-08 61.2 57 56.1
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 8.4e-08 61.2 59 52.5
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.1e-07 60.8 59 52.5
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.1e-07 60.8 73 47.9
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.4e-07 60.5 86 41.9
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.4e-07 60.5 59 52.5
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.9e-07 60.1 79 48.1
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.9e-07 60.1 89 43.8
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.9e-07 60.1 90 43.3
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 2.4e-07 59.7 57 54.4
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 2.4e-07 59.7 59 50.8
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 2.4e-07 59.7 61 52.5
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.4e-07 59.7 59 52.5
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 2.4e-07 59.7 57 54.4
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.4e-07 59.7 62 51.6
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.4e-07 59.7 61 49.2
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 3.2e-07 59.3 59 49.2
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 3.2e-07 59.3 59 54.2
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 4.2e-07 58.9 86 46.5
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.2e-07 58.9 59 54.2
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.2e-07 58.9 50 62.0
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 4.2e-07 58.9 59 50.8
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 4.2e-07 58.9 59 54.2
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 4.2e-07 58.9 59 50.8
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 4.2e-07 58.9 59 50.8
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 5.4e-07 58.5 61 47.5
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 5.4e-07 58.5 59 54.2
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.4e-07 58.5 59 54.2
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.4e-07 58.5 59 54.2
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 5.4e-07 58.5 69 50.7
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 5.4e-07 58.5 68 47.1
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 7.1e-07 58.2 55 54.5
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 7.1e-07 58.2 59 49.2
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.1e-07 58.2 59 54.2
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 9.3e-07 57.8 57 52.6
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 9.3e-07 57.8 56 53.6
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 9.3e-07 57.8 59 54.2
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 9.3e-07 57.8 59 54.2
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 9.3e-07 57.8 59 49.2
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 9.3e-07 57.8 59 50.8
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.2e-06 57.4 59 50.8
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.2e-06 57.4 61 47.5
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.2e-06 57.4 74 41.9
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.2e-06 57.4 58 55.2
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.6e-06 57.0 59 50.8
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.6e-06 57.0 73 42.5
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.6e-06 57.0 61 50.8
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.6e-06 57.0 59 49.2
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.1e-06 56.6 56 51.8
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.1e-06 56.6 56 51.8
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 2.1e-06 56.6 57 50.9
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.7e-06 56.2 55 49.1
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.5e-06 55.8 59 47.5
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 3.5e-06 55.8 59 47.5
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 4.6e-06 55.5 76 47.4
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 4.6e-06 55.5 76 47.4
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 4.6e-06 55.5 76 47.4
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 4.6e-06 55.5 72 43.1
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.6e-06 55.5 59 50.8
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 6.0e-06 55.1 57 47.4


User provided reference genes

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