Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 0.0e+00 1462.2 755 100.0
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 0.0e+00 1203.0 755 82.5
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 2.4e-259 899.0 747 62.7
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 2.0e-258 896.0 762 61.4
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 2.7e-258 895.6 748 61.4
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 7.7e-258 894.0 761 61.6
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.0e-257 893.6 759 61.4
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 1.3e-257 893.3 762 61.2
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 5.0e-257 891.3 748 60.7
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 1.9e-256 889.4 762 61.0
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 3.2e-256 888.6 760 61.7
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 3.6e-255 885.2 761 60.4
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 6.1e-255 884.4 763 61.3
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 3.0e-254 882.1 762 60.1
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 4.0e-254 881.7 758 60.9
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 5.2e-254 881.3 764 60.7
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 8.8e-254 880.6 759 60.9
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.7e-252 876.3 748 60.8
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 2.2e-252 875.9 759 60.5
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.8e-251 872.8 769 59.6
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 7.0e-251 870.9 760 59.3
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 1.6e-250 869.8 761 59.8
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 4.5e-250 868.2 748 59.5
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.3e-249 866.7 761 58.7
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 2.3e-249 865.9 748 60.4
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.3e-249 865.9 775 59.4
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 2.3e-249 865.9 761 59.4
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.9e-249 865.5 778 59.1
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.8e-249 865.1 758 59.5
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.1e-248 863.6 758 59.2
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 1.5e-248 863.2 762 59.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.5e-248 863.2 757 58.7
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.5e-248 863.2 766 59.5
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.9e-248 862.8 758 59.4
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.9e-248 862.8 747 58.9
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 3.3e-248 862.1 777 58.4
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 5.6e-248 861.3 759 60.1
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 7.3e-248 860.9 757 58.5
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 7.3e-248 860.9 760 58.3
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 2.1e-247 859.4 782 58.6
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 2.1e-247 859.4 759 59.4
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 4.7e-247 858.2 747 58.0
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.4e-246 856.7 762 59.8
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 1.8e-246 856.3 748 59.2
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 5.2e-246 854.7 766 58.2
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 8.9e-246 854.0 761 58.7
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.2e-245 853.6 766 58.6
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.0e-245 852.8 747 59.4
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 7.5e-245 850.9 748 59.5
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 9.8e-245 850.5 762 57.6
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 1.3e-244 850.1 745 59.9
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 3.7e-244 848.6 761 58.3
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 6.4e-244 847.8 761 58.7
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.4e-243 846.7 760 58.9
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 3.2e-243 845.5 761 58.1
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 9.2e-243 844.0 764 58.4
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.2e-242 843.6 766 57.3
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.6e-242 843.2 751 57.3
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 5.9e-242 841.3 763 58.2
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 1.0e-241 840.5 748 59.5
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.0e-241 840.5 754 58.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.3e-241 840.1 758 59.6
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.3e-241 839.3 757 59.6
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.3e-241 839.3 757 58.9
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 5.0e-241 838.2 759 58.5
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 5.0e-241 838.2 769 57.7
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 8.6e-241 837.4 754 59.4
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 3.3e-240 835.5 747 58.5
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 4.3e-240 835.1 761 58.3
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.4e-238 830.1 759 57.4
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 3.1e-238 828.9 760 58.4
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.0e-237 826.2 762 56.8
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.8e-237 823.9 714 60.9
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 8.3e-236 820.8 747 57.4
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.1e-235 820.5 754 58.6
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.9e-235 819.7 766 56.8
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 2.4e-235 819.3 748 56.7
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 4.1e-235 818.5 763 56.9
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 7.0e-235 817.8 765 57.0
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 7.0e-235 817.8 765 57.0
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 1.2e-234 817.0 765 57.1
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 2.0e-234 816.2 764 56.9
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 2.0e-234 816.2 764 56.9
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.0e-233 813.9 764 56.7
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.0e-233 813.9 764 56.7
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 8.6e-233 810.8 766 56.4
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 8.6e-233 810.8 766 56.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.1e-232 810.4 744 56.5
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.9e-232 809.7 735 59.0
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.2e-231 807.0 745 56.6
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.2e-231 807.0 750 57.7
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.2e-231 807.0 776 55.8
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.4e-230 803.5 756 56.9
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.8e-230 803.1 786 55.2
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 6.8e-230 801.2 689 62.1
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.1e-225 785.0 747 55.7
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 7.3e-224 781.2 763 53.9
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 7.3e-224 781.2 762 56.0
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 7.8e-218 761.1 763 53.7
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.6e-217 757.7 779 54.0
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 6.2e-215 751.5 664 58.6
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 8.1e-215 751.1 747 54.2
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.2e-213 747.3 713 57.1
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 8.7e-209 731.1 746 56.0
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 7.3e-208 728.0 638 59.4
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-203 713.8 762 51.0
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 7.9e-202 708.0 763 51.6
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 7.9e-202 708.0 763 51.6
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.9e-201 705.7 761 51.1
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 6.7e-201 704.9 825 47.8
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 6.9e-198 694.9 732 51.8
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.3e-196 690.6 750 50.0
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 8.4e-188 661.4 740 49.7
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.5e-184 650.6 732 49.3
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.1e-182 644.4 538 61.7
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 2.4e-182 643.3 530 62.6
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 5.3e-182 642.1 641 54.1
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.8e-177 627.1 737 47.9
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.4e-174 617.5 726 48.2
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 5.3e-174 615.5 387 84.0
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.6e-173 613.2 530 59.6
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 5.0e-172 609.0 531 60.8
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.7e-170 603.2 535 57.9
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 5.5e-155 552.4 602 50.3
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 8.6e-132 475.3 390 64.1
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.6e-130 471.1 749 40.9
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 4.9e-111 406.4 729 37.0
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.3e-95 355.1 349 53.3
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 3.2e-86 323.9 469 41.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 4.9e-79 300.1 764 29.7
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 6.4e-79 299.7 535 40.4
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 8.4e-79 299.3 834 30.0
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.9e-64 250.0 229 54.6
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 5.3e-57 226.9 211 57.3
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.0e-40 171.8 223 47.1
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 7.0e-33 146.7 149 51.7
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 1.6e-32 145.6 124 55.6
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 8.8e-28 129.8 136 51.5
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.3e-26 125.9 112 53.6
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.5e-24 117.9 98 59.2
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 2.3e-23 115.2 190 40.0
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 5.2e-20 104.0 209 37.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.5e-19 102.4 78 62.8
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 9.8e-19 99.8 104 50.0
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.2e-18 98.6 80 58.8
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 4.9e-18 97.4 119 42.9
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 4.1e-17 94.4 83 56.6
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.2e-17 93.2 67 67.2
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 3.5e-16 91.3 221 35.3
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 4.0e-12 77.8 98 44.9
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 2.6e-11 75.1 92 42.4
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 6.4e-10 70.5 103 41.7
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 4.6e-08 64.3 62 56.5
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.0e-07 63.2 79 44.3
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 2.5e-06 58.5 57 50.9
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 2.5e-06 58.5 57 50.9
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 4.3e-06 57.8 67 44.8


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