Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0846400 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 0.0e+00 1258.8 611 100.0
Os03g0109900 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D030339 2.8e-125 453.4 566 48.2
Os12g0141600 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 6.3e-101 372.5 529 44.6
Os11g0147200 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.6e-80 304.7 523 39.2
Os01g0776500 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 2.1e-80 304.3 312 51.0
Os07g0665700 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 2.3e-71 274.2 623 36.0
Os09g0436400 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 8.7e-42 176.0 239 43.9
Os07g0665300 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 7.1e-36 156.4 213 44.6
Os09g0436700 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 7.6e-30 136.3 220 35.5
Os06g0142000 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D030339 6.1e-27 126.7 246 37.4
Os01g0278600 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 9.7e-25 119.4 223 33.2
vmacro12393 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 6.3e-24 116.7 216 36.6
Zm00001eb408910 Zea mays HOM05D013536 ORTHO05D018072 2.9e-21 107.8 323 32.8
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 7.2e-20 103.2 222 30.6
Os09g0436300 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 4.6e-19 100.5 203 32.0
Duzib114G0774 Durio zibethinus HOM05D006716 ORTHO05D008396 6.1e-19 100.1 214 29.9
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 1.4e-18 99.0 257 30.7
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 1.8e-18 98.6 226 30.5
Ah.08g210040 Amaranthus hybridus HOM05D006716 ORTHO05D008396 3.0e-18 97.8 199 33.2
Hma1.2p1_0310F.1_g120920 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 3.9e-18 97.4 224 31.2
vmacro12389 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 6.7e-18 96.7 221 30.8
vmacro15749 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 6.7e-18 96.7 260 31.5
Duzib114G0950 Durio zibethinus HOM05D006716 ORTHO05D008396 1.1e-17 95.9 214 29.4
Rhsim02G0098700 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.5e-17 95.5 233 31.3
vmacro15746 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.0e-17 95.1 186 33.9
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 2.5e-17 94.7 204 33.3
Peaxi162Scf00475g00124 Petunia axillaris HOM05D006716 ORTHO05D008396 3.3e-17 94.4 211 30.8
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 7.4e-17 93.2 240 28.8
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 1.7e-16 92.0 217 29.0
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 2.2e-16 91.7 204 32.4
TPR.G15037 Trifolium pratense HOM05D006716 ORTHO05D008396 2.2e-16 91.7 279 26.9
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 6.3e-16 90.1 221 29.4
SGA_v2.0_scaffold57G20303 Striga asiatica HOM05D006716 ORTHO05D008396 1.8e-15 88.6 255 27.8
Duzib114G0505 Durio zibethinus HOM05D006716 ORTHO05D008396 3.1e-15 87.8 206 28.6
Peaxi162Scf00168g01523 Petunia axillaris HOM05D006716 ORTHO05D008396 3.1e-15 87.8 191 31.9
Sopen02g027280 Solanum pennellii HOM05D006716 ORTHO05D008396 3.1e-15 87.8 198 31.8
TPR.G29566 Trifolium pratense HOM05D006716 ORTHO05D008396 3.1e-15 87.8 226 29.6
vmacro12392 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 3.1e-15 87.8 188 33.0
Aqoxy4G01948 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 4.1e-15 87.4 224 28.6
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 4.1e-15 87.4 230 29.6
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 4.1e-15 87.4 221 29.0
Hma1.2p1_0003F.1_g003620 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 5.3e-15 87.0 222 28.8
Peaxi162Scf00663g00009 Petunia axillaris HOM05D006716 ORTHO05D008396 5.3e-15 87.0 208 30.3
Medtr5g464730 Medicago truncatula HOM05D006716 ORTHO05D008396 3.4e-14 84.3 219 29.7
Potri.018G001301 Populus trichocarpa HOM05D006716 ORTHO05D008396 4.5e-14 84.0 212 32.1
Nitab4.5_0007530g0040 Nicotiana tabacum HOM05D006716 ORTHO05D008396 5.9e-14 83.6 198 33.3
Zm00001eb065040 Zea mays HOM05D013536 ORTHO05D445124 1.0e-13 82.8 97 54.6
DCAR_002644 Daucus carota HOM05D006716 ORTHO05D008396 1.3e-13 82.4 265 30.6
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 1.3e-13 82.4 197 31.5
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.3e-13 82.4 228 28.9
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 1.7e-13 82.0 215 32.6
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.7e-13 82.0 160 31.9
Aqoxy4G01949 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 2.9e-13 81.3 250 27.2
Manes.S095408 Manihot esculenta HOM05D006716 ORTHO05D008396 2.9e-13 81.3 210 28.1
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 3.8e-13 80.9 200 29.0
Medtr5g064160 Medicago truncatula HOM05D006716 ORTHO05D008396 6.5e-13 80.1 244 28.7
SGA_v2.0_scaffold50G18515 Striga asiatica HOM05D006716 ORTHO05D008396 6.5e-13 80.1 251 26.3
vmacro15747 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 8.5e-13 79.7 201 30.8
CAN.G497.65 Capsicum annuum HOM05D006716 ORTHO05D008396 5.5e-12 77.0 207 30.9
Lj9A35T22 Lonicera japonica HOM05D006716 ORTHO05D008396 5.5e-12 77.0 229 27.1
Rhsim07G0026700 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.6e-11 75.5 217 29.0
DCAR_004702 Daucus carota HOM05D012205 ORTHO05D014781 2.1e-11 75.1 184 29.9
PSO017G6103 Papaver somniferum HOM05D006716 ORTHO05D008396 1.4e-10 72.4 137 31.4
EL10Ac7g17971 Beta vulgaris HOM05D012205 ORTHO05D014781 1.8e-10 72.0 203 30.0
Peaxi162Scf00226g00716 Petunia axillaris HOM05D006716 ORTHO05D008396 2.3e-10 71.6 202 30.7
DCAR_019182 Daucus carota HOM05D012205 ORTHO05D014781 3.0e-10 71.2 213 29.6
Os03g0221100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293029 3.0e-10 71.2 194 28.4
Zm00001eb065050 Zea mays HOM05D013536 ORTHO05D030339 5.1e-10 70.5 119 38.7
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 1.1e-09 69.3 167 30.5
SGA_v2.0_scaffold57G20300 Striga asiatica HOM05D006716 ORTHO05D008396 1.1e-09 69.3 212 27.4
CAN.G497.60 Capsicum annuum HOM05D006716 ORTHO05D008396 2.0e-09 68.6 194 31.4
DCAR_016243 Daucus carota HOM05D012205 ORTHO05D014781 2.6e-09 68.2 203 27.1
DCAR_015677 Daucus carota HOM05D012205 ORTHO05D014781 4.4e-09 67.4 216 25.9
Potri.018G001500 Populus trichocarpa HOM05D006716 ORTHO05D008396 7.4e-09 66.6 205 24.4
Os08g0144400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293916 2.8e-08 64.7 198 29.3
Solyc02g082590.3 Solanum lycopersicum HOM05D006716 ORTHO05D008396 4.8e-08 63.9 90 34.4
Peaxi162Scf00226g00715 Petunia axillaris HOM05D006716 ORTHO05D008396 6.3e-08 63.5 191 28.3
AUR62029714 Chenopodium quinoa HOM05D012205 ORTHO05D014781 1.1e-07 62.8 188 31.4
DCAR_026566 Daucus carota HOM05D012205 ORTHO05D014781 3.1e-07 61.2 197 28.9
Potri.018G001550 Populus trichocarpa HOM05D006716 ORTHO05D008396 9.1e-07 59.7 208 26.9
Peaxi162Scf00475g00024 Petunia axillaris HOM05D006716 ORTHO05D008396 2.6e-06 58.2 104 35.6
Peaxi162Scf00226g00717 Petunia axillaris HOM05D006716 ORTHO05D008396 4.5e-06 57.4 159 32.1


User provided reference genes

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