Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 7.1e-55 217.2 127 100.0
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 3.6e-43 178.3 94 88.3
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 4.8e-43 177.9 127 78.7
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 4.3e-28 128.3 94 60.6
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 4.3e-28 128.3 94 67.0
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 5.6e-28 127.9 93 62.4
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 9.6e-28 127.1 94 63.8
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 9.6e-28 127.1 84 69.0
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.3e-27 126.7 87 64.4
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.6e-27 126.3 87 63.2
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 6.2e-27 124.4 86 67.4
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 8.2e-27 124.0 92 60.9
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.1e-26 123.6 90 65.6
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.1e-26 123.6 93 62.4
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.8e-26 122.9 82 67.1
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.8e-26 122.9 86 66.3
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 2.4e-26 122.5 82 68.3
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 3.1e-26 122.1 90 64.4
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 4.0e-26 121.7 87 64.4
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 6.9e-26 120.9 94 61.7
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 6.9e-26 120.9 94 61.7
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 9.0e-26 120.6 93 61.3
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.2e-25 120.2 93 61.3
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.2e-25 120.2 78 66.7
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.5e-25 119.8 102 57.8
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.5e-25 119.8 89 60.7
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.0e-25 119.4 83 65.1
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 2.6e-25 119.0 88 61.4
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 2.6e-25 119.0 75 70.7
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 2.6e-25 119.0 83 67.5
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 3.4e-25 118.6 87 64.4
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.5e-25 118.2 95 60.0
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 5.8e-25 117.9 95 60.0
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 5.8e-25 117.9 82 68.3
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 7.6e-25 117.5 95 56.8
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.0e-24 117.1 75 66.7
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.3e-24 116.7 85 64.7
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.7e-24 116.3 94 59.6
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.7e-24 116.3 95 58.9
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.7e-24 116.3 95 60.0
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.7e-24 116.3 83 62.7
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.9e-24 115.5 72 69.4
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.8e-24 115.2 83 60.2
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.8e-24 115.2 80 66.2
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.8e-24 115.2 80 66.2
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 4.9e-24 114.8 94 58.5
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.5e-24 114.4 88 58.0
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.5e-24 114.4 88 58.0
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 6.5e-24 114.4 88 58.0
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 6.5e-24 114.4 84 59.5
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 8.4e-24 114.0 74 64.9
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 8.4e-24 114.0 81 60.5
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.1e-23 113.6 70 65.7
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.1e-23 113.6 70 67.1
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 1.1e-23 113.6 88 56.8
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.4e-23 113.2 88 56.8
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.5e-23 112.5 83 61.4
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 2.5e-23 112.5 83 60.2
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 2.5e-23 112.5 83 60.2
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 2.5e-23 112.5 82 63.4
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 2.5e-23 112.5 90 57.8
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.2e-23 112.1 88 56.8
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 3.2e-23 112.1 92 57.6
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 4.2e-23 111.7 78 66.7
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 4.2e-23 111.7 83 59.0
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 4.2e-23 111.7 82 61.0
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 4.2e-23 111.7 82 59.8
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 5.5e-23 111.3 94 55.3
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 5.5e-23 111.3 82 59.8
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 5.5e-23 111.3 82 62.2
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 5.5e-23 111.3 92 58.7
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 7.1e-23 110.9 70 72.9
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 7.1e-23 110.9 70 72.9
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 7.1e-23 110.9 83 60.2
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 7.1e-23 110.9 92 58.7
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 7.1e-23 110.9 92 58.7
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 9.3e-23 110.5 78 61.5
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 9.3e-23 110.5 72 68.1
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 9.3e-23 110.5 86 57.0
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 1.2e-22 110.2 82 59.8
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.2e-22 110.2 69 73.9
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.6e-22 109.8 92 51.1
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.1e-22 109.4 98 54.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 2.1e-22 109.4 82 62.2
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.7e-22 109.0 82 63.4
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.5e-22 108.6 69 72.5
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 4.6e-22 108.2 77 61.0
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.6e-22 108.2 78 60.3
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 4.6e-22 108.2 95 54.7
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 6.0e-22 107.8 86 57.0
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 6.0e-22 107.8 74 63.5
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 6.0e-22 107.8 85 61.2
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 7.9e-22 107.5 83 60.2
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 7.9e-22 107.5 79 62.0
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-21 106.7 86 57.0
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 1.3e-21 106.7 78 65.4
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.3e-21 106.7 91 53.8
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.8e-21 106.3 78 66.7
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 1.8e-21 106.3 75 61.3
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.3e-21 105.9 63 73.0
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.3e-21 105.9 63 73.0
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 2.3e-21 105.9 78 60.3
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.9e-21 105.1 65 72.3
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 3.9e-21 105.1 68 67.6
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 5.1e-21 104.8 78 57.7
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 6.7e-21 104.4 64 70.3
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 8.7e-21 104.0 89 55.1
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 8.7e-21 104.0 81 63.0
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.1e-20 103.6 75 61.3
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.5e-20 103.2 78 61.5
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 1.9e-20 102.8 88 54.5
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 2.5e-20 102.4 77 62.3
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.3e-20 102.1 71 60.6
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 4.3e-20 101.7 64 67.2
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 4.3e-20 101.7 64 67.2
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 4.3e-20 101.7 64 68.8
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 4.3e-20 101.7 64 67.2
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.3e-20 101.7 62 69.4
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 4.3e-20 101.7 74 62.2
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.3e-20 101.7 90 56.7
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 7.4e-20 100.9 64 67.2
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 7.4e-20 100.9 64 67.2
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 9.7e-20 100.5 64 65.6
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.6e-19 99.8 76 60.5
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.2e-19 99.4 88 53.4
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 2.8e-19 99.0 91 49.5
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 3.7e-19 98.6 67 59.7
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.3e-19 97.8 71 57.7
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.1e-18 97.1 71 62.0
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.1e-18 97.1 67 65.7
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.4e-18 95.9 68 63.2
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 3.1e-18 95.5 63 68.3
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 9.0e-18 94.0 75 58.7
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.2e-17 93.6 69 60.9
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 1.5e-17 93.2 63 66.7
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 2.0e-17 92.8 85 52.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.6e-17 90.9 82 50.0
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-16 90.1 70 57.1
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.3e-16 90.1 70 57.1
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.9e-15 86.3 81 48.1
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 4.2e-15 85.1 62 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.1e-14 82.8 73 49.3
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.1e-14 82.8 82 47.6
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.1e-14 81.3 60 60.0
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.4e-13 80.1 65 55.4
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.8e-13 79.7 56 60.7
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.7e-13 77.8 56 58.9
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 8.8e-13 77.4 54 61.1
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 9.7e-12 73.9 63 47.6
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 2.2e-11 72.8 114 36.0
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.7e-11 72.0 59 54.2
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.8e-10 69.7 52 59.6
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 2.2e-08 62.8 57 50.9
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 8.5e-08 60.8 37 70.3
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.7e-06 55.8 36 58.3


User provided reference genes

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