Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 4.4e-37 157.5 84 100.0
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 1.2e-31 139.4 84 79.8
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.2e-28 128.6 91 70.3
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 2.4e-27 125.2 85 71.8
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 7.0e-27 123.6 85 77.6
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 9.2e-27 123.2 85 70.6
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 9.2e-27 123.2 81 71.6
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.2e-26 122.9 85 71.8
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.6e-26 122.5 85 77.6
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 2.7e-26 121.7 85 71.8
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.5e-26 121.3 86 76.7
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 3.5e-26 121.3 85 70.6
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 6.0e-26 120.6 79 73.4
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.0e-25 119.8 79 73.4
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.0e-25 119.8 79 73.4
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.0e-25 119.8 75 78.7
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.0e-25 119.8 75 78.7
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.3e-25 119.4 76 75.0
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.7e-25 119.0 79 79.7
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 2.3e-25 118.6 79 70.9
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 2.3e-25 118.6 85 68.2
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 3.0e-25 118.2 79 72.2
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 3.0e-25 118.2 87 67.8
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 3.9e-25 117.9 86 69.8
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 3.9e-25 117.9 85 68.2
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 6.6e-25 117.1 79 77.2
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 6.6e-25 117.1 78 76.9
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.5e-24 115.9 79 78.5
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 1.5e-24 115.9 84 64.3
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.5e-24 115.9 85 68.2
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.9e-24 115.5 79 77.2
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.9e-24 115.5 79 68.4
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.9e-24 115.5 85 63.5
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 2.5e-24 115.2 79 67.1
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 3.3e-24 114.8 85 62.4
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 3.3e-24 114.8 84 70.2
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 4.3e-24 114.4 79 75.9
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.6e-24 114.0 86 65.1
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.6e-24 114.0 86 65.1
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.6e-24 114.0 86 65.1
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 5.6e-24 114.0 86 65.1
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 5.6e-24 114.0 86 65.1
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 5.6e-24 114.0 79 65.8
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 7.3e-24 113.6 85 61.2
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 7.3e-24 113.6 85 62.4
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 7.3e-24 113.6 85 63.5
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 7.3e-24 113.6 77 70.1
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 9.5e-24 113.2 79 67.1
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 9.5e-24 113.2 79 67.1
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 9.5e-24 113.2 79 67.1
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 9.5e-24 113.2 79 67.1
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 9.5e-24 113.2 79 65.8
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 9.5e-24 113.2 77 64.9
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.2e-23 112.8 79 67.1
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.2e-23 112.8 72 69.4
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 1.6e-23 112.5 86 64.0
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.6e-23 112.5 78 64.1
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.1e-23 112.1 79 72.2
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 2.1e-23 112.1 79 72.2
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 2.1e-23 112.1 79 72.2
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 2.1e-23 112.1 85 72.9
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 2.8e-23 111.7 85 70.6
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 2.8e-23 111.7 86 70.9
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 2.8e-23 111.7 79 63.3
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 4.7e-23 110.9 78 64.1
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 6.2e-23 110.5 94 59.6
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 6.2e-23 110.5 79 73.4
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 6.2e-23 110.5 80 66.2
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 8.1e-23 110.2 86 70.9
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 8.1e-23 110.2 78 64.1
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 8.1e-23 110.2 85 61.2
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 1.8e-22 109.0 79 62.0
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.8e-22 109.0 84 63.1
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.8e-22 109.0 78 62.8
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 1.8e-22 109.0 78 62.8
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 3.1e-22 108.2 85 61.2
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 3.1e-22 108.2 76 76.3
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 4.0e-22 107.8 79 67.1
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 4.0e-22 107.8 94 57.4
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 5.2e-22 107.5 84 63.1
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 8.9e-22 106.7 73 68.5
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 1.2e-21 106.3 72 61.1
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.2e-21 106.3 85 69.4
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 2.0e-21 105.5 84 63.1
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 2.0e-21 105.5 85 58.8
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 2.6e-21 105.1 84 69.0
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 3.4e-21 104.8 70 67.1
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 4.4e-21 104.4 69 75.4
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 5.8e-21 104.0 84 67.9
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 7.5e-21 103.6 81 60.5
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 7.5e-21 103.6 83 61.4
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 7.5e-21 103.6 81 61.7
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 7.5e-21 103.6 79 64.6
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 7.5e-21 103.6 92 58.7
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 9.9e-21 103.2 75 64.0
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 9.9e-21 103.2 84 59.5
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 9.9e-21 103.2 79 60.8
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 9.9e-21 103.2 79 60.8
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 9.9e-21 103.2 79 60.8
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 9.9e-21 103.2 63 73.0
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.3e-20 102.8 73 64.4
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.2e-20 102.1 73 64.4
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 2.2e-20 102.1 81 60.5
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 2.9e-20 101.7 74 73.0
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 2.9e-20 101.7 63 73.0
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 2.9e-20 101.7 63 73.0
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 3.7e-20 101.3 68 69.1
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 8.3e-20 100.1 77 62.3
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.1e-19 99.8 76 61.8
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 1.1e-19 99.8 85 60.0
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.4e-19 99.4 83 57.8
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 2.4e-19 98.6 81 59.3
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 2.4e-19 98.6 61 73.8
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.2e-19 98.2 83 59.0
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 7.1e-19 97.1 67 74.6
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 9.2e-19 96.7 67 64.2
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 9.2e-19 96.7 68 64.7
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 9.2e-19 96.7 77 59.7
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.6e-18 95.9 68 63.2
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 6.0e-18 94.0 63 69.8
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 7.8e-18 93.6 90 53.3
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.7e-17 92.4 70 58.6
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 3.0e-17 91.7 93 51.6
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 5.1e-17 90.9 84 54.8
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 6.6e-17 90.5 77 54.5
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.9e-16 89.0 60 65.0
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 9.5e-16 86.7 110 44.5
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 9.5e-16 86.7 68 63.2
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 9.5e-16 86.7 98 54.1
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 1.2e-15 86.3 66 57.6
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.1e-15 85.5 76 61.8
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 2.8e-15 85.1 72 58.3
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 3.6e-15 84.7 73 61.6
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 3.6e-15 84.7 72 50.0
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 3.6e-15 84.7 63 61.9
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.7e-15 84.3 55 65.5
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 4.7e-15 84.3 52 73.1
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 8.1e-15 83.6 86 52.3
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.4e-14 82.0 86 54.7
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 2.0e-13 79.0 79 51.9
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.6e-13 78.6 56 64.3
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 3.4e-13 78.2 53 66.0
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 9.9e-13 76.6 51 68.6
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 9.9e-13 76.6 52 65.4
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 9.9e-13 76.6 49 63.3
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.3e-12 76.3 54 68.5
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 5.4e-11 70.9 101 43.6
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 1.2e-10 69.7 93 40.9
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.2e-10 69.7 51 60.8
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 1.6e-10 69.3 65 46.2
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 2.1e-10 68.9 68 52.9
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 2.7e-10 68.6 46 65.2
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.1e-08 63.2 72 47.2
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 2.5e-08 62.0 59 54.2
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 4.0e-06 54.7 57 47.4


User provided reference genes

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