Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.2e-114 414.8 285 100.0
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 4.6e-54 215.7 207 67.6
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 5.5e-31 139.0 262 57.6
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.0e-29 134.8 262 59.5
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 2.3e-29 133.7 261 61.3
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.5e-28 131.0 266 59.8
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 3.3e-28 129.8 252 61.1
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.7e-28 129.0 296 57.4
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 9.7e-28 128.3 268 55.2
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.3e-27 127.9 233 62.2
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.2e-27 127.1 260 57.7
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 3.7e-27 126.3 283 55.5
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 3.7e-27 126.3 265 55.8
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 4.8e-27 125.9 276 55.4
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.1e-26 124.8 274 56.2
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.1e-26 124.8 257 58.4
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.1e-26 124.8 263 58.6
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.4e-26 123.6 274 55.1
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 7.0e-26 122.1 274 53.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 9.1e-26 121.7 264 45.5
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.5e-25 120.9 273 55.7
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-25 120.9 257 48.6
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 2.6e-25 120.2 270 55.9
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 4.5e-25 119.4 255 52.5
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.5e-25 119.4 271 55.7
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 7.7e-25 118.6 266 54.9
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 7.7e-25 118.6 254 48.8
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.0e-24 118.2 278 55.0
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.0e-24 118.2 164 50.0
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.0e-24 118.2 271 54.2
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.3e-24 117.9 269 56.5
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.3e-24 117.9 282 54.6
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.7e-24 117.5 263 54.4
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 2.2e-24 117.1 284 52.5
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.0e-24 115.9 293 50.9
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 5.0e-24 115.9 290 52.8
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 8.5e-24 115.2 257 55.3
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 8.5e-24 115.2 259 55.2
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 8.5e-24 115.2 255 55.3
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.1e-23 114.8 277 52.7
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.4e-23 114.4 194 44.8
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.4e-23 114.4 268 54.1
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.4e-23 114.4 282 53.9
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 1.9e-23 114.0 239 57.3
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.9e-23 114.0 279 53.4
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 3.2e-23 113.2 185 44.3
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 3.2e-23 113.2 181 47.0
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 3.2e-23 113.2 266 53.8
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 5.5e-23 112.5 291 52.6
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 7.2e-23 112.1 276 52.9
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 7.2e-23 112.1 186 45.7
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 9.4e-23 111.7 257 55.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 9.4e-23 111.7 258 55.8
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 9.4e-23 111.7 292 51.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.2e-22 111.3 281 53.0
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 1.2e-22 111.3 273 54.6
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 1.6e-22 110.9 274 54.4
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.6e-22 110.9 295 49.2
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.6e-22 110.9 259 54.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.6e-22 110.9 259 54.8
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.6e-22 110.9 270 55.6
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.6e-22 110.9 270 53.0
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.1e-22 110.5 277 52.0
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.7e-22 110.2 252 55.2
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.1e-22 109.0 292 51.0
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 6.1e-22 109.0 259 54.4
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 8.0e-22 108.6 266 52.3
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.0e-21 108.2 270 53.7
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.0e-21 108.2 291 50.5
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.8e-21 107.5 291 51.5
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.8e-21 107.5 277 52.0
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.8e-21 107.5 186 43.5
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.3e-21 107.1 287 50.5
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.3e-21 107.1 249 53.0
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 3.0e-21 106.7 284 51.4
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.9e-21 106.3 265 52.8
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.2e-21 105.9 272 54.8
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 6.7e-21 105.5 268 55.2
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.1e-20 104.8 281 51.6
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 1.5e-20 104.4 289 50.2
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.5e-20 104.4 289 50.2
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 2.6e-20 103.6 290 49.3
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 3.3e-20 103.2 291 50.5
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 3.3e-20 103.2 266 54.5
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 1.3e-19 101.3 265 48.3
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.3e-19 101.3 287 51.6
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.3e-19 101.3 265 51.3
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 2.2e-19 100.5 187 44.4
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 2.2e-19 100.5 289 38.4
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.2e-19 100.5 291 49.8
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 3.7e-19 99.8 249 55.8
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 4.8e-19 99.4 275 52.4
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.3e-19 99.0 163 43.6
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.1e-18 98.2 172 45.9
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.1e-18 98.2 208 37.0
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 1.8e-18 97.4 265 39.2
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 1.8e-18 97.4 265 39.2
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.8e-18 97.4 284 49.3
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.4e-18 97.1 273 53.8
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 2.4e-18 97.1 278 33.5
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 4.1e-18 96.3 254 52.8
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.3e-18 95.9 276 50.0
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 7.0e-18 95.5 294 49.0
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 7.0e-18 95.5 246 56.1
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 9.1e-18 95.1 265 47.2
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.2e-17 94.7 265 47.2
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 1.6e-17 94.4 284 49.3
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 1.6e-17 94.4 284 49.3
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 1.6e-17 94.4 284 49.3
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.6e-17 94.4 283 48.8
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.0e-17 94.0 274 49.6
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 2.0e-17 94.0 272 53.3
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.6e-17 93.6 197 41.1
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 2.6e-17 93.6 278 50.4
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 4.5e-17 92.8 284 48.2
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 5.9e-17 92.4 284 49.3
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 5.9e-17 92.4 252 34.1
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 5.9e-17 92.4 273 53.1
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.0e-16 91.7 267 52.1
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.3e-16 91.3 260 40.8
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.3e-16 91.3 304 50.0
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 2.9e-16 90.1 271 51.7
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 3.8e-16 89.7 183 39.3
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 5.0e-16 89.4 257 53.7
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 5.0e-16 89.4 268 53.7
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 5.0e-16 89.4 279 48.7
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.1e-15 88.2 268 50.7
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.5e-15 87.8 284 47.9
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.5e-15 87.8 176 40.9
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 2.5e-15 87.0 275 49.5
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 4.2e-15 86.3 284 47.9
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 4.2e-15 86.3 266 52.6
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 5.5e-15 85.9 282 39.7
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 7.2e-15 85.5 215 56.7
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 9.4e-15 85.1 277 50.5
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.6e-14 83.2 278 50.0
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 3.6e-14 83.2 286 48.6
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.4e-13 81.3 179 39.7
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 2.3e-13 80.5 205 41.0
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 2.3e-13 80.5 287 46.3
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 5.2e-13 79.3 188 35.6
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.2e-13 79.3 136 42.6
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 6.8e-13 79.0 295 48.5
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 6.8e-13 79.0 241 53.5
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 8.8e-13 78.6 277 50.2
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.2e-12 78.2 278 48.6
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 1.5e-12 77.8 293 47.4
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 5.7e-12 75.9 206 32.5
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 2.2e-11 73.9 121 42.1
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 2.2e-11 73.9 297 45.1
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.2e-11 73.9 132 39.4
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 8.3e-11 72.0 279 47.3
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.1e-10 71.6 164 64.0
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 3.1e-10 70.1 244 49.6
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 4.1e-10 69.7 253 50.2
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 5.3e-10 69.3 185 38.9
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 7.7e-09 65.5 117 80.3
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.7e-08 64.3 146 41.8
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 6.5e-08 62.4 260 46.2
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 1.5e-07 61.2 224 34.4
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 5.5e-07 59.3 169 29.6


User provided reference genes

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